Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QFX61_RS09395 Genome accession   NZ_CP132029
Coordinates   1833284..1834270 (-) Length   328 a.a.
NCBI ID   WP_304984497.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.4b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1828284..1839270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX61_RS09370 - 1828544..1828891 (-) 348 WP_001242102.1 hypothetical protein -
  QFX61_RS09375 - 1829077..1829670 (+) 594 WP_000224619.1 CYTH domain-containing protein -
  QFX61_RS09380 - 1829774..1830139 (+) 366 WP_000214070.1 truncated hemoglobin YjbI -
  QFX61_RS09385 yjbH 1830162..1830968 (+) 807 WP_000896696.1 protease adaptor protein YjbH -
  QFX61_RS09390 pepF 1831428..1833236 (-) 1809 WP_304984498.1 oligoendopeptidase F -
  QFX61_RS09395 coiA 1833284..1834270 (-) 987 WP_304984497.1 competence protein CoiA Machinery gene
  QFX61_RS09400 mecA 1834391..1835110 (-) 720 WP_001217728.1 adaptor protein MecA -
  QFX61_RS09405 spxA 1835482..1835877 (-) 396 WP_000258003.1 transcriptional regulator SpxA -
  QFX61_RS09410 trpS 1836172..1837161 (+) 990 WP_000448934.1 tryptophan--tRNA ligase -
  QFX61_RS09415 opp4C 1837203..1838084 (-) 882 WP_001180274.1 oligopeptide ABC transporter permease -
  QFX61_RS09420 opp4B 1838096..1839058 (-) 963 WP_000239820.1 oligopeptide ABC transporter permease -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38913.57 Da        Isoelectric Point: 9.6528

>NTDB_id=866772 QFX61_RS09395 WP_304984497.1 1833284..1834270(-) (coiA) [Staphylococcus aureus strain 2.4b]
MLVALKEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFTINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=866772 QFX61_RS09395 WP_304984497.1 1833284..1834270(-) (coiA) [Staphylococcus aureus strain 2.4b]
ATGTTAGTAGCTTTAAAGGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCA
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAACCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(5-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.476

100

0.985
  coiA Staphylococcus aureus N315

97.866

100

0.979