Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   WHQ32_RS02705 Genome accession   NZ_CP148161
Coordinates   496491..496874 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain Z1323HCJ0040     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 491491..501874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ32_RS02685 (WHQ32_02685) - 491570..493504 (-) 1935 WP_002852122.1 ribonuclease R family protein -
  WHQ32_RS02690 (WHQ32_02690) ilvC 493623..494645 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  WHQ32_RS02695 (WHQ32_02695) - 494649..495731 (+) 1083 WP_002852295.1 divergent polysaccharide deacetylase family protein -
  WHQ32_RS02700 (WHQ32_02700) dprA 495721..496494 (+) 774 WP_002852253.1 DNA-processing protein DprA Machinery gene
  WHQ32_RS02705 (WHQ32_02705) dprB 496491..496874 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  WHQ32_RS02710 (WHQ32_02710) - 496903..497742 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  WHQ32_RS02715 (WHQ32_02715) msrA 497919..498416 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  WHQ32_RS02720 (WHQ32_02720) ppa 498458..498976 (-) 519 WP_002852138.1 inorganic diphosphatase -
  WHQ32_RS02725 (WHQ32_02725) adk 498986..499564 (-) 579 WP_002852182.1 adenylate kinase -
  WHQ32_RS02730 (WHQ32_02730) aspS 499561..501312 (-) 1752 WP_002852289.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=866620 WHQ32_RS02705 WP_002852281.1 496491..496874(+) (dprB) [Campylobacter jejuni strain Z1323HCJ0040]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=866620 WHQ32_RS02705 WP_002852281.1 496491..496874(+) (dprB) [Campylobacter jejuni strain Z1323HCJ0040]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCCTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449