Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   Q8015_RS20555 Genome accession   NZ_CP132007
Coordinates   4440644..4441279 (-) Length   211 a.a.
NCBI ID   WP_305846771.1    Uniprot ID   -
Organism   Pseudomonas putida strain MRSN365855     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4435644..4446279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8015_RS20525 (Q8015_20525) murB 4436741..4437760 (-) 1020 WP_049586861.1 UDP-N-acetylmuramate dehydrogenase -
  Q8015_RS20530 (Q8015_20530) - 4437757..4438221 (-) 465 WP_004575950.1 low molecular weight protein-tyrosine-phosphatase -
  Q8015_RS20535 (Q8015_20535) kdsB 4438221..4438985 (-) 765 WP_305846770.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  Q8015_RS20540 (Q8015_20540) - 4438982..4439167 (-) 186 WP_003247142.1 Trm112 family protein -
  Q8015_RS20545 (Q8015_20545) lpxK 4439212..4440213 (-) 1002 WP_049586866.1 tetraacyldisaccharide 4'-kinase -
  Q8015_RS20550 (Q8015_20550) - 4440213..4440647 (-) 435 WP_010952926.1 biopolymer transporter ExbD -
  Q8015_RS20555 (Q8015_20555) exbB 4440644..4441279 (-) 636 WP_305846771.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  Q8015_RS20560 (Q8015_20560) comA 4441390..4443603 (-) 2214 WP_010952924.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  Q8015_RS20565 (Q8015_20565) - 4443746..4444252 (+) 507 Protein_4052 DUF2062 domain-containing protein -
  Q8015_RS20570 (Q8015_20570) - 4444262..4445041 (-) 780 WP_010952923.1 ABC transporter permease -
  Q8015_RS20575 (Q8015_20575) - 4445038..4445970 (-) 933 WP_010952922.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22790.06 Da        Isoelectric Point: 6.8757

>NTDB_id=866599 Q8015_RS20555 WP_305846771.1 4440644..4441279(-) (exbB) [Pseudomonas putida strain MRSN365855]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASGVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLASGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVIGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=866599 Q8015_RS20555 WP_305846771.1 4440644..4441279(-) (exbB) [Pseudomonas putida strain MRSN365855]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAACGCCTGTGGACCTTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTATGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGATTCGCCACTGGGTGAAATCCTCGCGGCGGGCCTAGCCAAT
TCGCGTCACGGTCGGGAGATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGGGCGTCATCCATGAACTGGAGCGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTGGGTCTGCTGGGCACCGTGCTAGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCAGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCTGGCCTGATGGTCGGTATTCCGGCAGTGTTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAACTGGTGATCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGTGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.517

100

0.815