Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   Q8W08_RS07580 Genome accession   NZ_CP131962
Coordinates   1624424..1625050 (+) Length   208 a.a.
NCBI ID   WP_020884792.1    Uniprot ID   A0A839BJN6
Organism   Enterobacter ludwigii strain 2023CK-00067     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1619424..1630050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8W08_RS07560 (Q8W08_07560) - 1619818..1621578 (-) 1761 WP_252068208.1 Lon protease family protein -
  Q8W08_RS07565 (Q8W08_07565) matP 1621765..1622217 (+) 453 WP_014169429.1 macrodomain Ter protein MatP -
  Q8W08_RS07570 (Q8W08_07570) ompA 1622287..1623342 (-) 1056 WP_020884794.1 porin OmpA -
  Q8W08_RS07575 (Q8W08_07575) sulA 1623697..1624206 (-) 510 WP_025204536.1 SOS-induced cell division inhibitor SulA -
  Q8W08_RS07580 (Q8W08_07580) sxy/tfoX 1624424..1625050 (+) 627 WP_020884792.1 TfoX/Sxy family DNA transformation protein Regulator
  Q8W08_RS07585 (Q8W08_07585) yccS 1625007..1627169 (-) 2163 WP_020884791.1 YccS family putative transporter -
  Q8W08_RS07590 (Q8W08_07590) - 1627189..1627635 (-) 447 WP_025204535.1 YccF domain-containing protein -
  Q8W08_RS07595 (Q8W08_07595) helD 1627758..1629812 (+) 2055 WP_047357173.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23864.38 Da        Isoelectric Point: 9.2489

>NTDB_id=866548 Q8W08_RS07580 WP_020884792.1 1624424..1625050(+) (sxy/tfoX) [Enterobacter ludwigii strain 2023CK-00067]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALNAARKERSQRDRRNRLKDLPNLTFQLEVLLFEAGITDEETLRELGARASWLKMRAKN
KALSIKVLFALEGAIAGLHEAALPAGIRRELTEWFNALPEPQENHSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=866548 Q8W08_RS07580 WP_020884792.1 1624424..1625050(+) (sxy/tfoX) [Enterobacter ludwigii strain 2023CK-00067]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTTTCACCCTTAGGTGAAATCCACCATCGTGCGCT
GTTCGGGGGGTATACCCTGGCCGTAGATGATGCCGTCTTCGCTATGGTCTCCGACGGGGAACTGTATCTCCGGGCCTGTG
AGGAAAGTGCAAAATACTGTGTAAAAAATGCCTCGTCATTCTTAACCCTCATGAAGCGGGGTCGTCCGGTGCTGCTCAAT
TATTATCGTGTCGATGACGGACTGTGGCAGGACAGAGAACGGCTGCTTCAGCTCTCCTCGTTCGCGCTCAATGCGGCACG
AAAAGAGCGTTCGCAGCGTGATCGGCGAAACCGCCTCAAGGACTTGCCCAATCTCACCTTTCAGCTTGAAGTGCTGCTCT
TTGAAGCCGGAATCACTGATGAAGAGACGCTGCGGGAGCTGGGTGCCCGTGCGAGCTGGCTGAAGATGCGGGCGAAGAAT
AAAGCGCTCAGCATTAAAGTGCTCTTCGCACTGGAAGGGGCCATCGCCGGACTTCATGAAGCGGCACTCCCGGCGGGAAT
TCGCCGGGAGTTAACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAATCACTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A839BJN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.113

97.596

0.577