Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   Q8W10_RS01675 Genome accession   NZ_CP131950
Coordinates   351553..352371 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 2023CK-00127     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346553..357371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q8W10_RS01640 (Q8W10_01640) - 347135..347265 (-) 131 Protein_313 hypothetical protein -
  Q8W10_RS01645 (Q8W10_01645) rpoZ 347304..347582 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  Q8W10_RS01650 (Q8W10_01650) gmk 347655..348284 (-) 630 WP_000015937.1 guanylate kinase -
  Q8W10_RS01655 (Q8W10_01655) ispH 348407..349357 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  Q8W10_RS01660 (Q8W10_01660) fimU 349527..350000 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  Q8W10_RS01665 (Q8W10_01665) pilV 349994..350554 (+) 561 WP_086221688.1 type IV pilus modification protein PilV Machinery gene
  Q8W10_RS01670 (Q8W10_01670) pilW 350555..351556 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  Q8W10_RS01675 (Q8W10_01675) pilX 351553..352371 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  Q8W10_RS01680 (Q8W10_01680) pilY1 352383..356237 (+) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  Q8W10_RS01685 (Q8W10_01685) pilY2 356250..356732 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  Q8W10_RS01690 (Q8W10_01690) pilE 356729..357154 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=866470 Q8W10_RS01675 WP_000149374.1 351553..352371(+) (pilX) [Acinetobacter baumannii strain 2023CK-00127]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=866470 Q8W10_RS01675 WP_000149374.1 351553..352371(+) (pilX) [Acinetobacter baumannii strain 2023CK-00127]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993