Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   Q7W79_RS13160 Genome accession   NZ_CP131931
Coordinates   1169430..1170851 (-) Length   473 a.a.
NCBI ID   WP_024702674.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain RP0132     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1164430..1175851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W79_RS13135 (Q7W79_13135) - 1164994..1165644 (+) 651 WP_005480776.1 thiopurine S-methyltransferase -
  Q7W79_RS13140 (Q7W79_13140) purT 1165746..1166921 (-) 1176 WP_274011943.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  Q7W79_RS13145 (Q7W79_13145) cdd 1167069..1167956 (-) 888 WP_020840481.1 cytidine deaminase -
  Q7W79_RS13150 (Q7W79_13150) - 1168321..1168998 (-) 678 WP_005454891.1 LrgB family protein -
  Q7W79_RS13155 (Q7W79_13155) - 1169000..1169374 (-) 375 WP_029825929.1 CidA/LrgA family protein -
  Q7W79_RS13160 (Q7W79_13160) sbcB 1169430..1170851 (-) 1422 WP_024702674.1 exodeoxyribonuclease I Machinery gene
  Q7W79_RS13165 (Q7W79_13165) - 1171007..1172380 (-) 1374 WP_005486634.1 L-cystine transporter -
  Q7W79_RS13170 (Q7W79_13170) - 1172573..1173268 (-) 696 WP_017448627.1 NAD(P)H-binding protein -
  Q7W79_RS13175 (Q7W79_13175) cobT 1173952..1174995 (+) 1044 WP_025504885.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  Q7W79_RS13180 (Q7W79_13180) - 1175040..1175792 (+) 753 WP_273978723.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54669.00 Da        Isoelectric Point: 5.0454

>NTDB_id=866354 Q7W79_RS13160 WP_024702674.1 1169430..1170851(-) (sbcB) [Vibrio parahaemolyticus strain RP0132]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRERQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=866354 Q7W79_RS13160 WP_024702674.1 1169430..1170851(-) (sbcB) [Vibrio parahaemolyticus strain RP0132]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCCGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCTGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTATCGCAACTTTATCGACCCATACGCGTGGAGTTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCAGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCGCAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAACGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCATGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGCATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTAGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGCCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGGTTCTTCTCTCCAGCTG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCAGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.958

100

0.801