Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WHP36_RS07105 Genome accession   NZ_CP148151
Coordinates   1356950..1357501 (+) Length   183 a.a.
NCBI ID   WP_002877747.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323PCJ0003     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1351950..1362501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP36_RS07070 (WHP36_07060) - 1352152..1352577 (+) 426 WP_002859154.1 GNAT family N-acetyltransferase -
  WHP36_RS07075 (WHP36_07065) - 1352641..1353250 (+) 610 Protein_1361 nitroreductase family protein -
  WHP36_RS07080 (WHP36_07070) - 1353250..1353855 (+) 606 WP_002877740.1 NAD(P)H-dependent oxidoreductase -
  WHP36_RS07085 (WHP36_07075) pgsA 1353980..1354516 (+) 537 WP_002877743.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  WHP36_RS07090 (WHP36_07080) rseP 1354513..1355619 (+) 1107 WP_002877745.1 RIP metalloprotease RseP -
  WHP36_RS07095 (WHP36_07085) - 1355612..1356477 (+) 866 Protein_1365 VirK family antimicrobial peptide resistance protein -
  WHP36_RS07100 (WHP36_07090) rpsF 1356564..1356941 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  WHP36_RS07105 (WHP36_07095) ssb 1356950..1357501 (+) 552 WP_002877747.1 single-stranded DNA-binding protein Machinery gene
  WHP36_RS07110 (WHP36_07100) rpsR 1357512..1357772 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  WHP36_RS07115 (WHP36_07105) lon 1357833..1360208 (-) 2376 WP_002868636.1 endopeptidase La -
  WHP36_RS07120 (WHP36_07110) - 1360225..1360872 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  WHP36_RS07125 (WHP36_07115) fliW 1361033..1361422 (+) 390 WP_002877749.1 flagellar assembly protein FliW -
  WHP36_RS07130 (WHP36_07120) proC 1361422..1362153 (+) 732 WP_002855729.1 pyrroline-5-carboxylate reductase Machinery gene
  WHP36_RS07135 (WHP36_07125) ctsT 1362150..1362452 (+) 303 WP_002877750.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20770.66 Da        Isoelectric Point: 5.0431

>NTDB_id=866271 WHP36_RS07105 WP_002877747.1 1356950..1357501(+) (ssb) [Campylobacter jejuni strain Z1323PCJ0003]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKTNPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=866271 WHP36_RS07105 WP_002877747.1 1356950..1357501(+) (ssb) [Campylobacter jejuni strain Z1323PCJ0003]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGCGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
GGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAACAAACCCCGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372