Detailed information NTG0866242

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: Q7W71_RS25600
• Genome accession: NZ_CP131924
• Coordinates: 4983998..4985347 (-)
• Length: 449 a.a.
• NCBI ID: WP_033716222.1
• Uniprot ID: -
• Organism: Bacillus mycoides strain PAMC 29627
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4978998..4990347

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q7W71_RS25575	-	4980538..4981475 (-)	938	Protein_4977	helix-turn-helix transcriptional regulator	-
Q7W71_RS25580	-	4981558..4982001 (+)	444	WP_002016134.1	VOC family protein	-
Q7W71_RS25585	raiA	4982106..4982648 (-)	543	WP_002016135.1	ribosome-associated translation inhibitor RaiA	-
Q7W71_RS25590	cspC	4982970..4983167 (-)	198	WP_001990088.1	cold shock protein CspC	-
Q7W71_RS25595	-	4983294..4983998 (-)	705	WP_033716000.1	ComF family protein	-
Q7W71_RS25600	comFA	4983998..4985347 (-)	1350	WP_033716222.1	ATP-dependent helicase ComFA	Machinery gene
Q7W71_RS25605	-	4985478..4986791 (-)	1314	WP_305453704.1	NlpC/P60 family protein	-
Q7W71_RS25610	-	4987056..4987370 (-)	315	WP_002089608.1	helix-turn-helix domain-containing protein	-
Q7W71_RS25615	-	4987533..4988375 (-)	843	WP_002016143.1	DegV family protein	-
Q7W71_RS25620	-	4988614..4989249 (+)	636	WP_002034752.1	YigZ family protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 50884.26 Da
• Isoelectric Point: 9.4468

>NTDB_id=866242 Q7W71_RS25600 WP_033716222.1 4983998..4985347(-) (comFA) [Bacillus mycoides strain PAMC 29627]
MLAGRQLLLEELSSDLQDKLDHLKRNRDVVCVQGVIKKSSKYMCQRCGNIEQRLFASLLCKRCNEVCTYCRKCITMGRVS
ECTVLVRGIAEISGESYLNPLQWEGILSDGQELAAQSVVDAVKQKESFFIWAVCGAGKTEMLFRGIAEALQKGERVCIAT
PRTDVVLELAPRLQEVFPNINVAALYGGSLDREKDAALIVATTHQLLRYYRAFHVMIVDEIDAFPYHADKMLQYAVNEAM
KEKAARIYLTATPDEKWKRKLRSGKQKGVIISGRYHRHPLPVPIFRWCGNWKKGLIRKKIPRALLQWLNLYLSKRYPIFL
FVPHVRYVEEISQLLKSLNNQIDGVHAEDPARKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSSDEPHGDVIYFHYGKTEAMVRAKKHIQSMNKNAKEQGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=866242 Q7W71_RS25600 WP_033716222.1 4983998..4985347(-) (comFA) [Bacillus mycoides strain PAMC 29627]
ATGTTAGCTGGTAGACAGTTATTGTTAGAAGAACTCTCTTCAGATTTGCAGGATAAATTGGATCATTTGAAAAGGAATCG
AGACGTGGTTTGTGTACAAGGGGTAATTAAGAAGTCTTCAAAATATATGTGTCAGCGCTGCGGAAATATAGAGCAGCGAC
TATTTGCATCATTGCTATGTAAAAGGTGCAATGAAGTATGTACGTATTGCCGGAAATGTATAACGATGGGCAGGGTAAGT
GAATGTACTGTACTTGTACGCGGGATTGCTGAAATAAGCGGAGAAAGTTATTTGAATCCGTTACAGTGGGAAGGCATTTT
GTCTGACGGTCAGGAGTTAGCTGCGCAAAGTGTCGTTGACGCTGTTAAGCAGAAAGAATCATTTTTTATTTGGGCGGTGT
GCGGGGCTGGAAAAACAGAAATGTTGTTTCGCGGAATTGCAGAGGCACTACAAAAGGGAGAAAGAGTTTGTATTGCAACG
CCGAGAACGGACGTTGTACTTGAATTAGCACCAAGATTACAAGAAGTGTTTCCAAATATAAATGTAGCTGCTTTATACGG
AGGGAGTTTAGACCGAGAAAAAGATGCGGCGTTAATCGTTGCAACTACACATCAATTGTTACGTTATTATAGGGCGTTCC
ATGTCATGATTGTAGATGAGATAGATGCTTTTCCGTATCATGCAGATAAGATGTTGCAGTATGCAGTAAACGAAGCGATG
AAAGAGAAGGCAGCACGTATTTATTTAACTGCAACTCCAGATGAAAAGTGGAAGCGTAAGTTGCGAAGTGGTAAGCAAAA
AGGGGTTATTATTTCAGGGCGATACCATCGTCATCCATTGCCAGTTCCGATATTTCGGTGGTGCGGAAATTGGAAAAAGG
GTCTTATACGTAAAAAAATTCCTCGTGCTTTATTACAATGGCTAAATCTGTACTTATCGAAACGATACCCCATTTTTCTA
TTTGTTCCTCATGTGCGATATGTAGAAGAAATTAGCCAGTTATTAAAATCATTAAACAATCAAATTGACGGTGTGCATGC
AGAAGATCCGGCGAGAAAAGAGAAGGTAGCAGCTTTCAGAAAAGGAGAAATCCCTTTATTAGTTACAACGACGATTTTGG
AACGCGGAGTAACTGTTAAAAATTTACAAGTTGCAGTTTTAGGAGCTGAGGAAGAAATATTTTCAGAAAGTGCTCTCGTT
CAAATTGCAGGGCGTGCTGGCAGAAGCTCTGATGAACCGCATGGAGATGTTATCTATTTTCATTATGGAAAGACAGAGGC
GATGGTGCGTGCGAAAAAACATATTCAAAGTATGAATAAGAATGCTAAAGAACAAGGATTGATAGATTGA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (107-254)

• Helicase conserved C-terminal domain (Helicase_C) (313-409)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	50.567	98.218	0.497
comFA	Latilactobacillus sakei subsp. sakei 23K	41.206	88.641	0.365