Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   Q7W71_RS20490 Genome accession   NZ_CP131924
Coordinates   4048363..4049157 (-) Length   264 a.a.
NCBI ID   WP_002015081.1    Uniprot ID   R8I3Q7
Organism   Bacillus mycoides strain PAMC 29627     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 4043363..4054157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W71_RS20465 - 4043842..4045914 (-) 2073 WP_002015086.1 sigma-54-dependent Fis family transcriptional regulator -
  Q7W71_RS20470 - 4046052..4046285 (+) 234 WP_001190193.1 DUF2627 domain-containing protein -
  Q7W71_RS20475 - 4046337..4047065 (-) 729 WP_002015085.1 glycerophosphodiester phosphodiesterase -
  Q7W71_RS20480 - 4047116..4047262 (+) 147 WP_001247671.1 YycC family protein -
  Q7W71_RS20485 - 4047503..4048065 (-) 563 Protein_3988 PRK06770 family protein -
  Q7W71_RS20490 spo0A 4048363..4049157 (-) 795 WP_002015081.1 sporulation transcription factor Spo0A Regulator
  Q7W71_RS20495 spoIVB 4049444..4050736 (-) 1293 WP_002015079.1 SpoIVB peptidase -
  Q7W71_RS20500 recN 4050856..4052595 (-) 1740 WP_002165085.1 DNA repair protein RecN Machinery gene
  Q7W71_RS20505 argR 4052866..4053315 (-) 450 WP_002015076.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29525.32 Da        Isoelectric Point: 7.1180

>NTDB_id=866229 Q7W71_RS20490 WP_002015081.1 4048363..4049157(-) (spo0A) [Bacillus mycoides strain PAMC 29627]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGIAYNGQECLNLLKEKQPDILVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKESATIKRPLPSFRSATTIDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=866229 Q7W71_RS20490 WP_002015081.1 4048363..4049157(-) (spo0A) [Bacillus mycoides strain PAMC 29627]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTGGTATCGATGCTAGAGAGTTATGTTGCTGCCCAAGA
TGATATGGAAGTTATCGGAATTGCTTACAATGGTCAAGAATGTTTAAACTTATTGAAAGAAAAGCAGCCTGATATACTCG
TTTTAGACATTATTATGCCACATTTAGATGGTCTAGCTGTGCTAGAGAAAATGCGACATATTGAAAGGTTAAGACAACCT
AGCGTTATTATGTTGACAGCATTCGGACAAGAAGATGTGACGAAAAAAGCGGTTGATTTAGGGGCATCATATTTCATATT
AAAACCATTTGATATGGAGAATTTAACAAGTCATATTCGTCAAGTTAGTGGTAAGGAAAGTGCTACTATTAAACGTCCAT
TACCATCTTTCCGATCAGCAACAACGATCGATGGAAAACCGAAAAACTTAGATGCGAGTATTACAAGTATCATTCATGAA
ATTGGTGTACCCGCTCATATTAAAGGGTACATGTACTTACGAGAAGCAATCTCTATGGTGTACAATGATATCGAATTACT
AGGATCTATTACGAAAGTATTATATCCAGATATTGCAAAGAAATATAATACAACAGCAAGCCGTGTTGAGCGCGCAATCC
GTCACGCAATTGAAGTAGCTTGGAGCCGTGGGAATATTGATTCTATTTCGTCCTTATTTGGTTATACTGTATCCATGTCA
AAAGCAAAACCTACGAATTCTGAGTTCATCGCAATGGTTGCGGATAAGCTAAGACTTGAACATAAGGCTAGCTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8I3Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818