Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   Q7W71_RS09930 Genome accession   NZ_CP131924
Coordinates   1931736..1932023 (+) Length   95 a.a.
NCBI ID   WP_002012401.1    Uniprot ID   A0A366G1Y4
Organism   Bacillus mycoides strain PAMC 29627     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1926736..1937023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W71_RS09910 - 1927913..1928113 (+) 201 WP_201038404.1 DUF4083 domain-containing protein -
  Q7W71_RS09915 - 1928141..1928602 (+) 462 WP_201038403.1 NUDIX hydrolase -
  Q7W71_RS09920 nadE 1928647..1929465 (-) 819 WP_002012398.1 ammonia-dependent NAD(+) synthetase -
  Q7W71_RS09925 - 1929736..1931616 (+) 1881 WP_201038402.1 FtsX-like permease family protein -
  Q7W71_RS09930 abrB 1931736..1932023 (+) 288 WP_002012401.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  Q7W71_RS09935 - 1932358..1933308 (+) 951 WP_002012402.1 serine protease -
  Q7W71_RS09940 - 1933407..1933493 (+) 87 Protein_1870 IS6 family transposase -
  Q7W71_RS09945 - 1933523..1934626 (-) 1104 WP_078422293.1 ABC transporter ATP-binding protein -
  Q7W71_RS09950 - 1935030..1935893 (-) 864 WP_201038400.1 CdaR family transcriptional regulator -
  Q7W71_RS09955 - 1935963..1936823 (-) 861 WP_305455363.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10647.42 Da        Isoelectric Point: 6.9795

>NTDB_id=866219 Q7W71_RS09930 WP_002012401.1 1931736..1932023(+) (abrB) [Bacillus mycoides strain PAMC 29627]
MKATGIIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSDQNISLANGNITVSIEGAK
HVIKEIEQFLNKSKI

Nucleotide


Download         Length: 288 bp        

>NTDB_id=866219 Q7W71_RS09930 WP_002012401.1 1931736..1932023(+) (abrB) [Bacillus mycoides strain PAMC 29627]
ATGAAAGCAACAGGAATTATTCGAAAAGTAGATGAATTGGGACGGATAGTTATTCCTAAAGAATTACGAGATGTATTAGG
AATACAAATCAAATCACCACTTGAAATTTTTGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAGACCAAAATATTTCATTAGCAAATGGAAACATTACTGTTAGTATAGAAGGCGCAAAA
CATGTAATAAAAGAAATTGAGCAGTTTTTGAACAAGAGTAAGATTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366G1Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.383

98.947

0.558