Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   Q7W71_RS07930 Genome accession   NZ_CP131924
Coordinates   1526998..1527600 (-) Length   200 a.a.
NCBI ID   WP_002166063.1    Uniprot ID   J8I015
Organism   Bacillus mycoides strain PAMC 29627     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1521998..1532600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7W71_RS07910 dnaD 1522301..1523008 (+) 708 WP_201038504.1 DNA replication protein DnaD -
  Q7W71_RS07915 nth 1523024..1523671 (+) 648 WP_000933020.1 endonuclease III -
  Q7W71_RS07920 - 1523675..1524193 (+) 519 WP_002086586.1 YpoC family protein -
  Q7W71_RS07925 - 1524220..1526931 (-) 2712 WP_305454915.1 PBP1A family penicillin-binding protein -
  Q7W71_RS07930 recU 1526998..1527600 (-) 603 WP_002166063.1 Holliday junction resolvase RecU Machinery gene
  Q7W71_RS07935 - 1527704..1528729 (+) 1026 WP_201038502.1 DUF2515 domain-containing protein -
  Q7W71_RS29510 - 1529073..1529219 (-) 147 WP_307838389.1 phage portal protein -
  Q7W71_RS07940 - 1529338..1529580 (+) 243 WP_002011865.1 hypothetical protein -
  Q7W71_RS07945 - 1529596..1529940 (+) 345 WP_002011864.1 YppE family protein -
  Q7W71_RS07950 - 1530119..1530310 (-) 192 WP_002030817.1 YppF family protein -
  Q7W71_RS07955 - 1530488..1531126 (+) 639 WP_002086577.1 YppG family protein -
  Q7W71_RS07960 - 1531283..1531708 (+) 426 WP_002011871.1 CotD family spore coat protein -
  Q7W71_RS07965 - 1531765..1532319 (+) 555 WP_002011870.1 DUF1273 domain-containing protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23324.55 Da        Isoelectric Point: 9.5600

>NTDB_id=866218 Q7W71_RS07930 WP_002166063.1 1526998..1527600(-) (recU) [Bacillus mycoides strain PAMC 29627]
MTIRYPNGKRYDQASQPHKTPIKKNTYSNRGMSLEEELNDTNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=866218 Q7W71_RS07930 WP_002166063.1 1526998..1527600(-) (recU) [Bacillus mycoides strain PAMC 29627]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAAAATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGACACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACTAAACAAGAAATAGAAGAGCATGGGTCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8I015

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.745

100

0.64