Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   WHO29_RS16650 Genome accession   NZ_CP148133
Coordinates   3392850..3393455 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli isolate FELIX_MS78     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3387850..3398455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO29_RS16630 aes 3387887..3388846 (+) 960 WP_000801813.1 acetyl esterase -
  WHO29_RS16635 hemH 3388843..3389805 (-) 963 WP_001250103.1 ferrochelatase -
  WHO29_RS16640 adk 3390041..3390685 (-) 645 WP_001220233.1 adenylate kinase -
  WHO29_RS16645 htpG 3390866..3392740 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  WHO29_RS16650 recR 3392850..3393455 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  WHO29_RS16655 ybaB 3393455..3393784 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  WHO29_RS16660 dnaX 3393837..3395768 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  WHO29_RS16665 apt 3395897..3396448 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  WHO29_RS16670 ybaN 3396601..3396978 (-) 378 WP_001188905.1 DUF454 family protein -
  WHO29_RS16675 priC 3397048..3397575 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  WHO29_RS16680 rsmS 3397589..3397750 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=866027 WHO29_RS16650 WP_001195025.1 3392850..3393455(-) (recR) [Escherichia coli isolate FELIX_MS78]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=866027 WHO29_RS16650 WP_001195025.1 3392850..3393455(-) (recR) [Escherichia coli isolate FELIX_MS78]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443