Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   WHO18_RS19850 Genome accession   NZ_CP148128
Coordinates   3770617..3771750 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis isolate FELIX_MS620     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3765617..3776750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO18_RS19810 ywnA 3765793..3766194 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  WHO18_RS19815 ureC 3766329..3768038 (-) 1710 WP_003243090.1 urease subunit alpha -
  WHO18_RS19820 ureB 3768035..3768409 (-) 375 WP_003227726.1 urease subunit beta -
  WHO18_RS19825 ureA 3768406..3768723 (-) 318 WP_003227724.1 urease subunit gamma -
  WHO18_RS19830 - 3768904..3769068 (-) 165 WP_015649919.1 hypothetical protein -
  WHO18_RS19835 - 3769340..3769508 (-) 169 Protein_3849 urea ABC transporter substrate-binding protein -
  WHO18_RS19840 csbD 3769721..3769909 (-) 189 WP_003227718.1 stress response protein CsbD -
  WHO18_RS19845 - 3769982..3770461 (-) 480 WP_003244390.1 hypothetical protein -
  WHO18_RS19850 rapC 3770617..3771750 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  WHO18_RS19855 moaA 3771942..3772967 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  WHO18_RS19860 fdhD 3772983..3773771 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  WHO18_RS19865 - 3774017..3774178 (-) 162 WP_003227706.1 hypothetical protein -
  WHO18_RS19870 ywmD 3774272..3774946 (-) 675 WP_003243553.1 VWA domain-containing protein -
  WHO18_RS19875 - 3774999..3775139 (-) 141 WP_003227702.1 hypothetical protein -
  WHO18_RS19880 ywmC 3775270..3775953 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=865879 WHO18_RS19850 WP_003227715.1 3770617..3771750(-) (rapC) [Bacillus subtilis isolate FELIX_MS620]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=865879 WHO18_RS19850 WP_003227715.1 3770617..3771750(-) (rapC) [Bacillus subtilis isolate FELIX_MS620]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAACTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424