Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   WHO18_RS03895 Genome accession   NZ_CP148128
Coordinates   750545..751675 (+) Length   376 a.a.
NCBI ID   WP_003243267.1    Uniprot ID   Q59HN8
Organism   Bacillus subtilis isolate FELIX_MS620     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 745545..756675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO18_RS03870 - 745847..746152 (-) 306 WP_003242885.1 hypothetical protein -
  WHO18_RS03875 yezA 746219..746425 (-) 207 WP_003233877.1 bacteriocin immunity protein -
  WHO18_RS03880 yezG 746665..747120 (-) 456 WP_010886434.1 TIGR01741 family protein -
  WHO18_RS03885 yeeF 747140..749149 (-) 2010 WP_003242909.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  WHO18_RS03890 - 749361..750383 (+) 1023 WP_003243884.1 hypothetical protein -
  WHO18_RS03895 rapC 750545..751675 (+) 1131 WP_003243267.1 response regulator aspartate phosphatase RapH Regulator
  WHO18_RS03900 phrH 751665..751838 (+) 174 WP_003242557.1 phosphatase RapH inhibitor PhrH -
  WHO18_RS03905 yeeI 751998..752717 (+) 720 WP_003242611.1 YebC/PmpR family DNA-binding transcriptional regulator -
  WHO18_RS03910 yeeK 752851..753288 (+) 438 WP_003244206.1 spore coat protein YeeK -
  WHO18_RS03915 yezE 753403..753987 (+) 585 WP_003243181.1 TetR/AcrR family transcriptional regulator -
  WHO18_RS03920 yesE 754066..754509 (+) 444 WP_003233857.1 nuclear transport factor 2 family protein -
  WHO18_RS03925 yesF 754506..755366 (+) 861 WP_003243852.1 NAD-dependent epimerase/dehydratase family protein -
  WHO18_RS03930 cotJA 755493..755741 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  WHO18_RS03935 cotJB 755725..755988 (+) 264 WP_003219491.1 spore coat protein CotJB -
  WHO18_RS03940 cotJC 756003..756572 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44003.32 Da        Isoelectric Point: 5.7372

>NTDB_id=865765 WHO18_RS03895 WP_003243267.1 750545..751675(+) (rapC) [Bacillus subtilis isolate FELIX_MS620]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMY
HILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=865765 WHO18_RS03895 WP_003243267.1 750545..751675(+) (rapC) [Bacillus subtilis isolate FELIX_MS620]
TTGAGTCAAGCCATACCGTCTTCGCGTGTTGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTTGAGCAGGACATTCAGCAGATGGAAGAAGATCAGGATTTACTGATCTATTATT
CTCTGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGAAAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATCGAGACCCCTCAGAAAAAACTCACAGGTCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGACCAAAAAGAATATGTGGAAGCGATCGGATATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGATATTGAGAAAGCGGAATTCCATTTTAAAGTGGCAGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGTAT
CATATTCTTCAAGCCTTGGACATTTATCAAAACCATCCTCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTGGAATTGGCAATGGACATTC
AAAATGACAGGTTTATCGCCATTTCTCTATTGAACATTGCAAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCAGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3Q15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

40.053

100

0.402