Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   Q7571_RS01645 Genome accession   NZ_CP131885
Coordinates   352030..352452 (+) Length   140 a.a.
NCBI ID   WP_024433097.1    Uniprot ID   A0AAP1W5M5
Organism   Acinetobacter baumannii strain 2008S11-069     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347030..357452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7571_RS01635 (Q7571_01640) - 347351..351457 (+) 4107 WP_024436449.1 PilC/PilY family type IV pilus protein -
  Q7571_RS01640 (Q7571_01645) - 351467..352030 (+) 564 WP_024436448.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  Q7571_RS01645 (Q7571_01650) comF 352030..352452 (+) 423 WP_024433097.1 type IV pilin protein Machinery gene
  Q7571_RS01650 (Q7571_01655) rpsP 352600..352851 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  Q7571_RS01655 (Q7571_01660) rimM 352871..353419 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  Q7571_RS01660 (Q7571_01665) trmD 353465..354205 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  Q7571_RS01665 (Q7571_01670) rplS 354413..354781 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  Q7571_RS01670 (Q7571_01675) - 354834..355775 (-) 942 WP_085916958.1 triacylglycerol lipase -
  Q7571_RS01675 (Q7571_01680) - 355890..356924 (-) 1035 WP_032008730.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15517.59 Da        Isoelectric Point: 9.2459

>NTDB_id=865749 Q7571_RS01645 WP_024433097.1 352030..352452(+) (comF) [Acinetobacter baumannii strain 2008S11-069]
MKKYEGFTLIELMIVVAIIAILAAIAYPSYTQYKIRTNRADVQSEMMQTAQRLQSYYVINHNYTSATLNNGLTTKDYPAS
NPIYTIALVTNSQTWTLTATPKTNTIQAGNGTVLLNSDGQKCWTKGQSCTTSTTSNWDGK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=865749 Q7571_RS01645 WP_024433097.1 352030..352452(+) (comF) [Acinetobacter baumannii strain 2008S11-069]
ATGAAAAAATATGAAGGTTTTACCCTCATAGAGCTAATGATTGTGGTTGCTATTATTGCAATTTTGGCAGCAATTGCTTA
CCCCTCCTATACACAATATAAAATTCGGACGAATCGTGCAGATGTGCAAAGTGAAATGATGCAAACCGCACAACGTCTAC
AAAGTTACTATGTGATTAATCATAATTATACTAGTGCTACACTCAATAATGGTTTAACTACTAAAGATTATCCAGCATCC
AATCCAATTTATACTATTGCACTAGTCACAAACTCTCAAACATGGACGCTTACTGCAACTCCTAAAACAAATACGATTCA
AGCTGGGAATGGGACTGTACTTTTGAATAGTGACGGGCAGAAATGTTGGACTAAAGGTCAGTCTTGTACAACTTCAACCA
CTTCCAATTGGGATGGCAAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

54.167

100

0.557
  pilE Acinetobacter baumannii D1279779

52.941

97.143

0.514
  pilA2 Legionella pneumophila str. Paris

39.416

97.857

0.386
  pilA2 Legionella pneumophila strain ERS1305867

39.416

97.857

0.386