Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   Q7572_RS18180 Genome accession   NZ_CP131878
Coordinates   3730319..3731473 (+) Length   384 a.a.
NCBI ID   WP_004883884.1    Uniprot ID   A0AAV3IRL2
Organism   Acinetobacter nosocomialis strain 2014S01-097     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 3731675..3732883 3730319..3731473 flank 202


Gene organization within MGE regions


Location: 3730319..3732883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7572_RS18180 (Q7572_18215) tsaP 3730319..3731473 (+) 1155 WP_004883884.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  Q7572_RS18185 (Q7572_18220) - 3731495..3731647 (+) 153 Protein_3549 DNA-protecting protein DprA -
  Q7572_RS18190 (Q7572_18225) - 3731675..3732883 (-) 1209 WP_000343018.1 IS256-like element ISAba26 family transposase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42290.22 Da        Isoelectric Point: 8.5822

>NTDB_id=865740 Q7572_RS18180 WP_004883884.1 3730319..3731473(+) (tsaP) [Acinetobacter nosocomialis strain 2014S01-097]
MKKVFNGMAEFHALGIKKHLLALALCTTVALGTVAEVHAASPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYVVGTADQRVLAGKGQTIYARGKGLVDGQRYAVYREGEPYYFTDSKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKHSVVTLDRGTAQGVQVGQ
VFDITQQGETIRDPKTKEAIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKIGSSIQPPRFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=865740 Q7572_RS18180 WP_004883884.1 3730319..3731473(+) (tsaP) [Acinetobacter nosocomialis strain 2014S01-097]
ATGAAAAAGGTTTTTAACGGCATGGCTGAATTTCATGCTTTGGGGATAAAGAAGCATTTACTTGCTTTAGCACTCTGTAC
AACTGTCGCACTAGGTACGGTAGCAGAGGTTCATGCTGCCAGTCCAAATCATAATCCACCTTCTCTTAAAAGCAATGCAC
CGAATGTGTATGTTGTAAAACGTGGGGATACTCTATGGGATATTTCCGGCCATTTTCTCAATAAGCCATGGCGTTGGCCT
GAAATTTGGGCAAGTAATCAACATGTTAAAAACCCTCACTGGATTTATCCGGGCGATCGATTACTGTTATGTAGCTTAGA
TGGACGTCCACTTGTGGGCAAAGATGAAGGAGATGGCTGTGTAGGCATTATTCGTCGTTACACAGGCCAAACCACAAACT
TACAACCACAAGTTCGCGTAGAAGCATTAAATAATAGTGTGCCAGTTATTCCACTTGAACATATTAAACAGTGGCTAGAG
AACAGCACTATTTTACCAGCCGATTCAATTACCAACACACCTTACGTTGTTGGTACAGCCGACCAACGTGTACTTGCAGG
AAAAGGTCAAACTATTTATGCAAGAGGAAAAGGTCTAGTTGATGGTCAGCGTTATGCAGTCTATCGAGAAGGTGAACCTT
ACTATTTCACAGATAGTAAAGGTAAAAAGCATAGTCTTGGTATTGAGCTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGACATTACTACATTAGAGCTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAACAAGCTACTTTGCCAACCTTATTTTACCCAGTAGATGCCAAACAAGTGACTGATGGGGGCAAAATTATTCGTGTCA
TGGGTTCAATCGGTAGAGCTGCAAAACATAGTGTAGTGACTTTGGACCGCGGTACAGCACAAGGTGTTCAGGTAGGTCAA
GTTTTTGATATTACACAACAAGGCGAGACAATTCGCGATCCTAAAACTAAAGAAGCGATTCAACTTCCTGGTCAACAAAT
TGGGAGTCTGATGGTTTTTAGAACTTTTGATCAGCTGAGTTATGCCTATGTCCTAGAAAGCGATTTGCCTATTAAAATCG
GTTCAAGCATTCAGCCACCTCGCTTTAACGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

94.792

100

0.948