Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   Q7572_RS10245 Genome accession   NZ_CP131878
Coordinates   2125130..2125510 (-) Length   126 a.a.
NCBI ID   WP_004887479.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain 2014S01-097     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2120130..2130510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7572_RS10215 (Q7572_10230) tadA 2120135..2120638 (-) 504 WP_006580788.1 tRNA adenosine(34) deaminase TadA -
  Q7572_RS10220 (Q7572_10235) - 2120645..2121769 (-) 1125 WP_006580787.1 enoyl-CoA hydratase/isomerase family protein -
  Q7572_RS10225 (Q7572_10240) ung 2121766..2122479 (-) 714 WP_002049829.1 uracil-DNA glycosylase -
  Q7572_RS10230 (Q7572_10245) - 2122530..2123126 (-) 597 WP_004887474.1 6-carboxytetrahydropterin synthase -
  Q7572_RS10235 (Q7572_10250) gspK 2123356..2124315 (-) 960 WP_004887476.1 type II secretion system minor pseudopilin GspK -
  Q7572_RS10240 (Q7572_10255) xcpW 2124315..2125130 (-) 816 WP_004887477.1 type II secretion system minor pseudopilin GspJ Machinery gene
  Q7572_RS10245 (Q7572_10260) xcpV 2125130..2125510 (-) 381 WP_004887479.1 type II secretion system minor pseudopilin GspI Machinery gene
  Q7572_RS10250 (Q7572_10265) - 2125500..2126051 (-) 552 WP_002049902.1 type II secretion system protein -
  Q7572_RS10255 (Q7572_10270) - 2126061..2126669 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  Q7572_RS10260 (Q7572_10275) - 2126707..2127480 (-) 774 WP_004887481.1 TatD family hydrolase -
  Q7572_RS10265 (Q7572_10280) - 2127498..2127839 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  Q7572_RS10270 (Q7572_10285) - 2127852..2128832 (-) 981 WP_004887483.1 DNA polymerase III subunit delta' -
  Q7572_RS10275 (Q7572_10290) kdsB 2128844..2129605 (-) 762 WP_004887485.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14024.27 Da        Isoelectric Point: 9.7155

>NTDB_id=865720 Q7572_RS10245 WP_004887479.1 2125130..2125510(-) (xcpV) [Acinetobacter nosocomialis strain 2014S01-097]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEIAMMEINQEWLQGTQTKQVTSQGETWQI
YKSAESTVSPNVQKIDVQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=865720 Q7572_RS10245 WP_004887479.1 2125130..2125510(-) (xcpV) [Acinetobacter nosocomialis strain 2014S01-097]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTAGCAGCTGTTGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCTACTTCTAATGCCATTTTAAGAACTAAAGCTCAATTTGTAGCTATGAATGAAATTG
CTATGATGGAGATTAATCAAGAGTGGCTGCAGGGCACTCAAACTAAGCAAGTAACTTCTCAAGGAGAGACTTGGCAGATT
TATAAATCAGCTGAATCAACTGTTAGCCCTAATGTTCAAAAAATTGATGTACAAGTTAGCTTATATGATCCGGATAAGGG
AAAAGTACAAAACGGTATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

95.238

100

0.952