Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   WHO46_RS14100 Genome accession   NZ_CP148127
Coordinates   2860193..2860822 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli isolate FELIX_MS59     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2855193..2865822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO46_RS14085 helD 2855435..2857489 (-) 2055 WP_001295354.1 DNA helicase IV -
  WHO46_RS14090 yccF 2857612..2858058 (+) 447 WP_001261235.1 YccF domain-containing protein -
  WHO46_RS14095 yccS 2858068..2860230 (+) 2163 WP_000875061.1 YccS family putative transporter -
  WHO46_RS14100 sxy/tfoX 2860193..2860822 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  WHO46_RS14105 sulA 2861041..2861550 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  WHO46_RS14110 ompA 2861907..2862947 (+) 1041 WP_000750416.1 porin OmpA -
  WHO46_RS14115 matP 2863023..2863475 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  WHO46_RS14120 ycbZ 2863661..2865421 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=865699 WHO46_RS14100 WP_000839153.1 2860193..2860822(-) (sxy/tfoX) [Escherichia coli isolate FELIX_MS59]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=865699 WHO46_RS14100 WP_000839153.1 2860193..2860822(-) (sxy/tfoX) [Escherichia coli isolate FELIX_MS59]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1