Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   Q7573_RS01815 Genome accession   NZ_CP131873
Coordinates   388871..389512 (+) Length   213 a.a.
NCBI ID   WP_002116944.1    Uniprot ID   A0A009RUZ9
Organism   Acinetobacter pittii strain 2014S07-126     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 383871..394512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7573_RS01795 (Q7573_01800) - 383877..384209 (+) 333 WP_002116981.1 hypothetical protein -
  Q7573_RS01800 (Q7573_01805) rrmA 384212..385036 (+) 825 WP_002117059.1 putative RNA methyltransferase -
  Q7573_RS01805 (Q7573_01810) ponA 385091..387652 (-) 2562 WP_002116655.1 penicillin-binding protein PBP1a -
  Q7573_RS01810 (Q7573_01815) pilM 387813..388871 (+) 1059 WP_031945632.1 pilus assembly protein PilM Machinery gene
  Q7573_RS01815 (Q7573_01820) pilN 388871..389512 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  Q7573_RS01820 (Q7573_01825) pilO 389509..390261 (+) 753 WP_002116684.1 type 4a pilus biogenesis protein PilO Machinery gene
  Q7573_RS01825 (Q7573_01830) pilP 390272..390799 (+) 528 WP_002116864.1 pilus assembly protein PilP Machinery gene
  Q7573_RS01830 (Q7573_01835) pilQ 390862..393027 (+) 2166 WP_002116833.1 type IV pilus secretin PilQ Machinery gene
  Q7573_RS01835 (Q7573_01840) aroK 393039..393608 (+) 570 WP_002116987.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23921.36 Da        Isoelectric Point: 5.4186

>NTDB_id=865657 Q7573_RS01815 WP_002116944.1 388871..389512(+) (pilN) [Acinetobacter pittii strain 2014S07-126]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAISSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=865657 Q7573_RS01815 WP_002116944.1 388871..389512(+) (pilN) [Acinetobacter pittii strain 2014S07-126]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGATGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTATCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RUZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685