Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   Q7574_RS17000 Genome accession   NZ_CP131867
Coordinates   3565538..3565864 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain 2012N08-034     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3560538..3570864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7574_RS16980 (Q7574_17045) - 3560644..3561270 (-) 627 WP_002121153.1 FHA domain-containing protein -
  Q7574_RS16985 (Q7574_17050) gspD 3561311..3563581 (-) 2271 WP_044100184.1 type II secretion system secretin GspD -
  Q7574_RS16990 (Q7574_17055) - 3563623..3564459 (-) 837 WP_151283492.1 type II secretion system protein N -
  Q7574_RS16995 (Q7574_17060) gspN 3564459..3565202 (-) 744 WP_342063401.1 type II secretion system protein N -
  Q7574_RS17000 (Q7574_17065) hns 3565538..3565864 (-) 327 WP_000801427.1 H-NS histone family protein Regulator
  Q7574_RS17005 (Q7574_17070) - 3566059..3566499 (-) 441 WP_342063402.1 thioesterase family protein -
  Q7574_RS17010 (Q7574_17075) - 3566507..3567700 (-) 1194 WP_017385883.1 membrane protein -
  Q7574_RS17015 (Q7574_17080) - 3567710..3568552 (-) 843 WP_151283493.1 hypothetical protein -
  Q7574_RS17020 (Q7574_17085) hemD 3568561..3569328 (-) 768 WP_151283494.1 uroporphyrinogen-III synthase -
  Q7574_RS17025 (Q7574_17090) hemC 3569332..3570249 (-) 918 WP_342063403.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=865646 Q7574_RS17000 WP_000801427.1 3565538..3565864(-) (hns) [Acinetobacter pittii strain 2012N08-034]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=865646 Q7574_RS17000 WP_000801427.1 3565538..3565864(-) (hns) [Acinetobacter pittii strain 2012N08-034]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1