Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   Q7574_RS16490 Genome accession   NZ_CP131867
Coordinates   3453670..3455898 (+) Length   742 a.a.
NCBI ID   WP_342063382.1    Uniprot ID   -
Organism   Acinetobacter pittii strain 2012N08-034     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3448670..3460898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7574_RS16465 (Q7574_16525) lnt 3449051..3450610 (+) 1560 WP_342063381.1 apolipoprotein N-acyltransferase -
  Q7574_RS16470 (Q7574_16530) csaA 3450612..3450950 (-) 339 WP_005079284.1 tRNA-binding protein -
  Q7574_RS16475 (Q7574_16535) - 3451096..3451440 (-) 345 WP_005804170.1 hypothetical protein -
  Q7574_RS16480 (Q7574_16540) gspG 3451708..3452292 (-) 585 WP_005079288.1 type II secretion system major pseudopilin GspG -
  Q7574_RS16485 (Q7574_16545) gspF 3452316..3453521 (-) 1206 WP_005065941.1 type II secretion system inner membrane protein GspF -
  Q7574_RS16490 (Q7574_16550) priA 3453670..3455898 (+) 2229 WP_342063382.1 primosomal protein N' Machinery gene
  Q7574_RS16495 (Q7574_16555) kefB 3455975..3457819 (+) 1845 WP_032005112.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  Q7574_RS16500 (Q7574_16560) hslO 3457983..3458858 (+) 876 WP_002114728.1 Hsp33 family molecular chaperone HslO -
  Q7574_RS16505 (Q7574_16565) - 3458996..3459607 (+) 612 WP_002115157.1 LysE family translocator -
  Q7574_RS16510 (Q7574_16570) cbpA 3459754..3460710 (+) 957 WP_033849582.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84099.84 Da        Isoelectric Point: 8.3558

>NTDB_id=865642 Q7574_RS16490 WP_342063382.1 3453670..3455898(+) (priA) [Acinetobacter pittii strain 2012N08-034]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTQAQYEWAHVGSRVAISFGRQNLIGIITEKVDPSESFTGTFQLKAISELL
DEEPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKITPCDNIEALLKRSVKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPSPVQLAQMPLTLNEDQKKATQHVVNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQNCPVILGSATPSIDSYYLVETGKLTSLQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEATEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=865642 Q7574_RS16490 WP_342063382.1 3453670..3455898(+) (priA) [Acinetobacter pittii strain 2012N08-034]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTAGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCCAAGCACAATATGAATGGGCTCATGTAGGCTCACGCGTCGCTATTTCATTTGGGCGCCAAAACCTGA
TTGGCATCATTACTGAAAAAGTTGATCCAAGTGAATCATTTACAGGCACCTTTCAGCTTAAAGCCATTTCTGAACTTTTA
GATGAAGAACCAATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCCGCACAATATTACCAATTTCCAATTGGTGA
GGTTATGCAAACTGCCCTACCCGCATTATTGCGTCAGGGCAAACCGATGGATGTTTTGTTCCATCTTTGGAAAATCACGC
CATGTGATAATATTGAAGCACTTCTTAAACGCTCTGTTAAACAACAAGATGCGTATCAAATATTAAAGTTACACCCTGCC
GGAACTACAGAGAATATTCTTAATTTAAGTGGTGTAGAAACAGCTACGCTTAAAGCACTTCAAAAGAAAGGACTGGTTGA
CTGTACGCTTGAACCACACGATTTTAGCCCATCGCCTGTTCAATTGGCACAAATGCCTCTCACGCTAAATGAAGACCAAA
AGAAAGCAACCCAGCACGTCGTAAATGCACAACATCAATACCAAGCCTTTTTATTAGATGGTTTAACAGGAAGTGGTAAA
ACTGAAGTTTATCTGCACATCATGCACGAAGTGCTAAAGCAAGGTAAGCAAGTACTGGTGTTAGTCCCTGAAATTGGTCT
AACCCCTCAAACGATTTCTCGTTTTAAATCACGTTTTAACTGTGATATTGCTCTATTACACTCGGGCTTAAATGACTCCA
AACGCTTGCAGGCATGGCAACAGGCCCAGACTGGCAAAGCATCTATTATTTTAGGAACGCGCTCTGCGATCTATACGCCA
CTGCCACGTTTGGGCCTCATCATCTTAGATGAAGAACATGATCTGTCTTATAAGCAACAAGAAGGCTTCCGCTACCATGC
GCGTGATGTCGCTCTTTATCGAGGCCACTTACAAAACTGCCCTGTTATTTTAGGTTCAGCAACACCGAGCATAGATAGTT
ATTATTTGGTCGAAACTGGTAAATTAACTTCACTGCAACTTAATCAACGTGCAGGCCATGCGCTTTTACCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAACAGCATGGAATTAGCCAGCCTTTAATCGAACAGATTAAAAATACCCTAGCTAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGCTATGCACCTGTACTGGTCTGTGAAAGTTGTGGATGGCAAGCAA
ATTGTCCGCATTGTGATGCGCATTTTACGTTGCACACTCAGCCTTATTCTTATTTACACTGCCACCACTGCGGTACTGTT
CATCGCTTGCCAGACCATTGCCCTGAATGCCAGCAAAAAAGCTTAAAAACCTTAGGGGCAGGAACTGCCAAGGTTGAAGA
GCACTTACAAGAACTATTTCCAGACTATGATGTGATTCGGGTTGACCGTGACAGCACCAGTCGTGTCGGTAGCTGGCAAA
AAATCTATGATCGGATTCATCAAAACAAACCAACAATTTTGCTTGGCACTCAAATGCTGGCAAAAGGTCATCATTTCCCA
CACGTGACTTTGGTTGCCATTTTAGATATTGATGCGGGGTTACTTAGTGTCGATATTCGTGCGCCAGAACGTACTGCGCA
GTTAATTGTACAAGTCGCTGGACGTGCAGGTCGTGGTGAACACAAAGGCCATGTTTATTTACAGACCTTAAGACCAGATC
ACCCTTTACTCACCACGCTCATCGAAAAAGATTATCGGGCGGTTGCTAAACAGACTCTTGCGGAACGTAAAGTCGCATTG
CTGCCGCCTTACCGTTATGCAGTACTGATACGTGCGGAATCCAAAGATCGCGACTACACCTTACATTTCTTAAATGAAGC
GACGGAACAATTACGCCAAATTGCAGGTGACATTGTTGATATTTGGGGACCGATTCCAGCCCCTATGGAGCGTAAAGCAG
GACGCTACCGCGCCCACATGGTGATTTTATCTGCCGACCGTGCTCGCCTACATTTTTACTTAAGACAATGGTGGTCACAA
TTGGTTCATGCACCACGGCAGCATCAACTTCGGCTATCAATTGATGTTGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-370)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.844

100

0.978