Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   WHO38_RS09250 Genome accession   NZ_CP148124
Coordinates   1773112..1773543 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis isolate FELIX_MS521     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1768112..1778543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO38_RS09230 spoVS 1768673..1768933 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  WHO38_RS09235 tdh 1769199..1770242 (+) 1044 WP_003244880.1 L-threonine 3-dehydrogenase -
  WHO38_RS09240 kbl 1770255..1771433 (+) 1179 WP_003231837.1 glycine C-acetyltransferase -
  WHO38_RS09245 miaB 1771581..1773110 (+) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  WHO38_RS09250 ymcA 1773112..1773543 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  WHO38_RS09255 cotE 1773805..1774350 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  WHO38_RS09260 hexA 1774483..1777059 (+) 2577 WP_003244841.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=865573 WHO38_RS09250 WP_003231834.1 1773112..1773543(+) (ymcA) [Bacillus subtilis isolate FELIX_MS521]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=865573 WHO38_RS09250 WP_003231834.1 1773112..1773543(+) (ymcA) [Bacillus subtilis isolate FELIX_MS521]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1