Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   WHO38_RS05595 Genome accession   NZ_CP148124
Coordinates   1076168..1076911 (+) Length   247 a.a.
NCBI ID   WP_003233230.1    Uniprot ID   G4NRP4
Organism   Bacillus subtilis isolate FELIX_MS521     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1071168..1081911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO38_RS05560 yhaI 1071496..1071837 (+) 342 WP_009966921.1 YhaI family protein -
  WHO38_RS05565 scoC 1071834..1072445 (-) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -
  WHO38_RS05570 yhaH 1072623..1072979 (-) 357 WP_003245875.1 YtxH domain-containing protein -
  WHO38_RS05575 - 1073109..1073300 (+) 192 WP_003233238.1 hypothetical protein -
  WHO38_RS05580 trpP 1073374..1073892 (-) 519 WP_003233236.1 tryptophan transporter TrpP -
  WHO38_RS05585 serC 1074017..1075096 (-) 1080 WP_003233234.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  WHO38_RS05590 hinT 1075243..1075680 (-) 438 WP_003233231.1 HIT family protein -
  WHO38_RS05595 pptA 1076168..1076911 (+) 744 WP_003233230.1 ABC transporter ATP-binding protein EcsA Regulator
  WHO38_RS05600 ecsB 1076904..1078130 (+) 1227 WP_003245169.1 ABC transporter permease EcsB -
  WHO38_RS05605 ecsC 1078150..1078860 (+) 711 WP_003233225.1 EcsC family protein -
  WHO38_RS05610 sndC 1078878..1080068 (-) 1191 WP_003245681.1 N-acetyl amino acid acetylase SndC -
  WHO38_RS05615 - 1080141..1081532 (-) 1392 WP_003233218.1 hypothetical protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27722.20 Da        Isoelectric Point: 5.9114

>NTDB_id=865533 WHO38_RS05595 WP_003233230.1 1076168..1076911(+) (pptA) [Bacillus subtilis isolate FELIX_MS521]
MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIELNGKTFAEDPEGYRSQFTY
IPETPVLYEELTLMEHLELTAMAYGLSKETMEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPALYIIDE
PFLGLDPLAINALLERMNEAKKGGASVLMSTHILATAERYCDSFIILHNGEVRARGTLSELREQFGMKDAALDDLYLELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=865533 WHO38_RS05595 WP_003233230.1 1076168..1076911(+) (pptA) [Bacillus subtilis isolate FELIX_MS521]
ATGTCTCTGCTATCGGTAAAAGACTTGACCGGCGGATATACAAGGAATCCGGTTTTAAAAAACGTATCATTCACCCTTGA
ACCGAATCAAATTGTCGGCTTAATCGGGCTGAATGGTGCTGGTAAAAGTACAACAATCAGACACATCATCGGGCTGATGG
ACCCGCATAAAGGTTCAATCGAATTAAACGGTAAAACGTTTGCTGAGGATCCGGAAGGCTACCGTTCACAATTTACCTAT
ATACCTGAAACACCTGTTTTATACGAAGAATTGACGCTGATGGAGCATCTTGAACTAACAGCCATGGCATATGGACTGTC
AAAAGAAACGATGGAGAAAAGGCTGCCTCCGCTACTAAAGGAATTCCGAATGGAAAAGAGGCTGAAGTGGTTCCCGGCCC
ATTTTTCTAAAGGAATGAAGCAGAAGGTTATGATTATGTGCGCATTTTTGGCAGAGCCTGCGCTCTACATTATTGATGAG
CCTTTTCTAGGGCTTGATCCGCTTGCCATTAACGCGCTGCTTGAACGGATGAATGAAGCGAAAAAAGGCGGGGCGAGCGT
GCTGATGTCAACACACATTTTGGCAACGGCAGAACGCTATTGCGATTCGTTTATTATTTTACATAACGGCGAGGTGCGGG
CGCGCGGCACGCTGTCAGAGCTCAGAGAGCAGTTTGGAATGAAGGACGCGGCGCTGGACGATTTGTATCTTGAGCTTACA
AAGGAAGACGCTGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NRP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

56.904

96.761

0.551
  pptA Streptococcus thermophilus LMD-9

56.485

96.761

0.547