Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   WHO38_RS02420 Genome accession   NZ_CP148124
Coordinates   475654..476088 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis isolate FELIX_MS521     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 470654..481088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO38_RS02390 ydaD 471304..472164 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  WHO38_RS02395 lyxE 472180..472683 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  WHO38_RS02400 ydaF 472769..473320 (+) 552 WP_003246691.1 GNAT family protein -
  WHO38_RS02405 ydaG 473398..473820 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  WHO38_RS02410 amj 474326..475135 (+) 810 WP_003234394.1 lipid II flippase Amj -
  WHO38_RS02415 ydzA 475179..475469 (-) 291 WP_003246602.1 DUF3817 domain-containing protein -
  WHO38_RS02420 lrpC 475654..476088 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  WHO38_RS02425 topB 476153..478336 (+) 2184 WP_003246684.1 DNA topoisomerase III -
  WHO38_RS02430 epsJ 478539..479627 (+) 1089 WP_003246551.1 lipoprotein -
  WHO38_RS02435 epsK 479608..480459 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=865516 WHO38_RS02420 WP_003246585.1 475654..476088(+) (lrpC) [Bacillus subtilis isolate FELIX_MS521]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=865516 WHO38_RS02420 WP_003246585.1 475654..476088(+) (lrpC) [Bacillus subtilis isolate FELIX_MS521]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1