Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   WHO22_RS16250 Genome accession   NZ_CP148122
Coordinates   3070914..3071624 (-) Length   236 a.a.
NCBI ID   WP_003229230.1    Uniprot ID   O34977
Organism   Bacillus subtilis isolate FELIX_MS513     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3065914..3076624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO22_RS16230 cysK 3065965..3066900 (+) 936 WP_003229237.1 cysteine synthase A -
  WHO22_RS16235 pepV 3066934..3068325 (-) 1392 WP_004399126.1 dipeptidase PepV -
  WHO22_RS16240 pbuO 3068422..3069720 (+) 1299 WP_003229234.1 hypoxanthine/guanine permease PbuO -
  WHO22_RS16245 ythQ 3069760..3070917 (-) 1158 WP_003229232.1 ABC transporter permease -
  WHO22_RS16250 pptA 3070914..3071624 (-) 711 WP_003229230.1 ABC transporter ATP-binding protein Regulator
  WHO22_RS16255 ytzE 3071915..3072136 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  WHO22_RS16260 rsuA 3072257..3072976 (-) 720 WP_003229226.1 pseudouridine synthase -
  WHO22_RS16265 murJ 3073045..3074679 (-) 1635 WP_003229224.1 lipid II flippase MurJ -
  WHO22_RS16270 ytfP 3074881..3076143 (+) 1263 WP_003229222.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26506.56 Da        Isoelectric Point: 5.3508

>NTDB_id=865461 WHO22_RS16250 WP_003229230.1 3070914..3071624(-) (pptA) [Bacillus subtilis isolate FELIX_MS513]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEESEFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDVQDKTGLEGQSLLDCFYKAVQGDRL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=865461 WHO22_RS16250 WP_003229230.1 3070914..3071624(-) (pptA) [Bacillus subtilis isolate FELIX_MS513]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTGGTTGGACTGATCGGAGCTAACGGCGCAGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTCTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTTCACGGCATTGAAGAGAGTGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTAGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATGTTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O34977

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432