Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   WHO22_RS08250 Genome accession   NZ_CP148122
Coordinates   1567937..1568386 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis isolate FELIX_MS513     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1562937..1573386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO22_RS08210 ctaE 1562954..1563577 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  WHO22_RS08215 ctaF 1563580..1563912 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  WHO22_RS08220 ctaG 1563939..1564832 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  WHO22_RS08225 ylbA 1564864..1565226 (-) 363 WP_003232238.1 YugN family protein -
  WHO22_RS08230 ylbB 1565366..1565812 (+) 447 WP_003221362.1 CBS domain-containing protein -
  WHO22_RS08235 ylbC 1565896..1566936 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  WHO22_RS08240 ylbD 1567168..1567566 (+) 399 WP_003232233.1 YlbD family protein -
  WHO22_RS08245 ylbE 1567582..1567821 (+) 240 WP_003232231.1 YlbE-like family protein -
  WHO22_RS08250 ylbF 1567937..1568386 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  WHO22_RS08255 ylbG 1568441..1568713 (+) 273 WP_009967171.1 YlbG family protein -
  WHO22_RS08260 rsmD 1569036..1569590 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  WHO22_RS08265 coaD 1569595..1570080 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  WHO22_RS08270 spoVV 1570091..1571317 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  WHO22_RS08275 ylbK 1571498..1572280 (+) 783 WP_003232221.1 patatin family protein -
  WHO22_RS08280 sepM 1572282..1573307 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=865403 WHO22_RS08250 WP_003221370.1 1567937..1568386(+) (ylbF) [Bacillus subtilis isolate FELIX_MS513]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=865403 WHO22_RS08250 WP_003221370.1 1567937..1568386(+) (ylbF) [Bacillus subtilis isolate FELIX_MS513]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1