Detailed information NTG0086540

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AABK20_RS07035
• Genome accession: NZ_AP027500
• Coordinates: 1466050..1467075 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644904.1
• Uniprot ID: P0ACN8
• Organism: Escherichia coli strain LR-25
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 1461050..1472075

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABK20_RS07005 (VEE02_13420)	zapB	1461134..1461379 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
AABK20_RS07010 (VEE02_13430)	rraA	1461464..1461949 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
AABK20_RS07015 (VEE02_13440)	menA	1462042..1462968 (-)	927	WP_000139496.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AABK20_RS07020 (VEE02_13450)	hslU	1463035..1464366 (-)	1332	WP_001293343.1	HslU--HslV peptidase ATPase subunit	-
AABK20_RS07025 (VEE02_13460)	hslV	1464376..1464906 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
AABK20_RS07030 (VEE02_13470)	ftsN	1464999..1465958 (-)	960	WP_000068834.1	cell division protein FtsN	-
AABK20_RS07035 (VEE02_13480)	cytR	1466050..1467075 (-)	1026	WP_000644904.1	DNA-binding transcriptional regulator CytR	Regulator
AABK20_RS07040 (VEE02_13490)	priA	1467231..1469429 (-)	2199	WP_001325632.1	primosomal protein N'	Machinery gene
AABK20_RS07045 (VEE02_13500)	rpmE	1469632..1469844 (+)	213	WP_000710769.1	50S ribosomal protein L31	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37819.78 Da
• Isoelectric Point: 6.3842

>NTDB_id=86540 AABK20_RS07035 WP_000644904.1 1466050..1467075(-) (cytR) [Escherichia coli strain LR-25]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=86540 AABK20_RS07035 WP_000644904.1 1466050..1467075(-) (cytR) [Escherichia coli strain LR-25]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTCGCACCGGAACTGGAG
CTACCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATCTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

3D structure

• AlphaFold DB: P0ACN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	64.179	98.24	0.63
cytR	Vibrio cholerae C6706	65.443	95.894	0.628