Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   AABK20_RS06105 Genome accession   NZ_AP027500
Coordinates   1276320..1277312 (+) Length   330 a.a.
NCBI ID   WP_000224476.1    Uniprot ID   A7ZTW4
Organism   Escherichia coli strain LR-25     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1271320..1282312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK20_RS06080 (VEE02_11760) rbsD 1271444..1271863 (+) 420 WP_001297694.1 D-ribose pyranase -
  AABK20_RS06085 (VEE02_11770) rbsA 1271871..1273376 (+) 1506 WP_000387753.1 ribose ABC transporter ATP-binding protein RbsA -
  AABK20_RS06090 (VEE02_11780) rbsC 1273381..1274346 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  AABK20_RS06095 (VEE02_11790) rbsB 1274371..1275261 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  AABK20_RS06100 (VEE02_11800) rbsK 1275387..1276316 (+) 930 WP_001300603.1 ribokinase -
  AABK20_RS06105 (VEE02_11810) cytR 1276320..1277312 (+) 993 WP_000224476.1 ribose operon transcriptional repressor RbsR Regulator
  AABK20_RS06110 (VEE02_11820) mdtD 1277278..1278705 (-) 1428 WP_001280838.1 multidrug transporter subunit MdtD -
  AABK20_RS06115 (VEE02_11830) yieP 1278728..1279420 (-) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36584.88 Da        Isoelectric Point: 5.2141

>NTDB_id=86532 AABK20_RS06105 WP_000224476.1 1276320..1277312(+) (cytR) [Escherichia coli strain LR-25]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLSIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=86532 AABK20_RS06105 WP_000224476.1 1276320..1277312(+) (cytR) [Escherichia coli strain LR-25]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAGCATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZTW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.349

100

0.376
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment