Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   Q7585_RS23780 Genome accession   NZ_CP131794
Coordinates   5134276..5134833 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain 2014S01-136     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5129276..5139833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7585_RS23760 (Q7585_23770) pilR 5130552..5131889 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  Q7585_RS23765 (Q7585_23775) thiO 5131935..5133029 (-) 1095 WP_009316267.1 glycine oxidase ThiO -
  Q7585_RS23770 (Q7585_23780) - 5133164..5133673 (+) 510 WP_058013097.1 Tfp pilus assembly protein FimT/FimU -
  Q7585_RS23775 (Q7585_23785) - 5133779..5134285 (+) 507 WP_003110423.1 Tfp pilus assembly protein FimT/FimU -
  Q7585_RS23780 (Q7585_23790) pilV 5134276..5134833 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  Q7585_RS23785 (Q7585_23795) pilW 5134830..5135654 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  Q7585_RS23790 (Q7585_23800) pilX 5135651..5136238 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  Q7585_RS23795 (Q7585_23805) pilY1 5136250..5139735 (+) 3486 WP_342125574.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=865217 Q7585_RS23780 WP_003094697.1 5134276..5134833(+) (pilV) [Pseudomonas aeruginosa strain 2014S01-136]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=865217 Q7585_RS23780 WP_003094697.1 5134276..5134833(+) (pilV) [Pseudomonas aeruginosa strain 2014S01-136]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978