Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   Q7586_RS21360 Genome accession   NZ_CP131791
Coordinates   4593441..4593965 (-) Length   174 a.a.
NCBI ID   WP_003116261.1    Uniprot ID   Q7WZP2
Organism   Pseudomonas aeruginosa strain 2014S05-249     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4588441..4598965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7586_RS21345 (Q7586_21350) - 4588525..4592001 (-) 3477 WP_023122776.1 PilC/PilY family type IV pilus protein -
  Q7586_RS21350 (Q7586_21355) - 4592015..4592620 (-) 606 WP_003116263.1 pilus assembly protein -
  Q7586_RS21355 (Q7586_21360) - 4592617..4593432 (-) 816 WP_016562347.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  Q7586_RS21360 (Q7586_21365) pilV 4593441..4593965 (-) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  Q7586_RS21365 (Q7586_21370) - 4593975..4594463 (-) 489 WP_033944824.1 GspH/FimT family pseudopilin -
  Q7586_RS21370 (Q7586_21375) - 4594586..4595086 (-) 501 WP_016562346.1 GspH/FimT family pseudopilin -
  Q7586_RS21375 (Q7586_21380) thiO 4595226..4596320 (+) 1095 WP_033944813.1 glycine oxidase ThiO -
  Q7586_RS21380 (Q7586_21385) pilR 4596366..4597703 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18763.51 Da        Isoelectric Point: 4.9113

>NTDB_id=865177 Q7586_RS21360 WP_003116261.1 4593441..4593965(-) (pilV) [Pseudomonas aeruginosa strain 2014S05-249]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=865177 Q7586_RS21360 WP_003116261.1 4593441..4593965(-) (pilV) [Pseudomonas aeruginosa strain 2014S05-249]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTGCTAGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WZP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

59.429

100

0.598