Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   Q7587_RS27485 Genome accession   NZ_CP131788
Coordinates   5731053..5731610 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2014S06-172     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5726053..5736610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7587_RS27465 (Q7587_27460) pilR 5727329..5728666 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  Q7587_RS27470 (Q7587_27465) thiO 5728712..5729806 (-) 1095 WP_003119424.1 glycine oxidase ThiO -
  Q7587_RS27475 (Q7587_27470) - 5729941..5730450 (+) 510 WP_342178773.1 Tfp pilus assembly protein FimT/FimU -
  Q7587_RS27480 (Q7587_27475) - 5730556..5731062 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  Q7587_RS27485 (Q7587_27480) pilV 5731053..5731610 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  Q7587_RS27490 (Q7587_27485) pilW 5731607..5732431 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  Q7587_RS27495 (Q7587_27490) pilX 5732428..5733015 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  Q7587_RS27500 (Q7587_27495) pilY1 5733027..5736518 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=865148 Q7587_RS27485 WP_003119423.1 5731053..5731610(+) (pilV) [Pseudomonas aeruginosa strain 2014S06-172]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=865148 Q7587_RS27485 WP_003119423.1 5731053..5731610(+) (pilV) [Pseudomonas aeruginosa strain 2014S06-172]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995