Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   Q7587_RS10345 Genome accession   NZ_CP131788
Coordinates   2164860..2167619 (+) Length   919 a.a.
NCBI ID   WP_003163304.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2014S06-172     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 2167767..2180415 2164860..2167619 flank 148


Gene organization within MGE regions


Location: 2164860..2180415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7587_RS10345 (Q7587_10340) fimV 2164860..2167619 (+) 2760 WP_003163304.1 motility hub landmark protein FimV Machinery gene
  Q7587_RS10350 (Q7587_10345) - 2167767..2168816 (-) 1050 WP_042929192.1 tyrosine-type recombinase/integrase -
  Q7587_RS10355 (Q7587_10350) - 2168816..2169058 (-) 243 WP_003158850.1 DUF4224 domain-containing protein -
  Q7587_RS10360 (Q7587_10355) - 2169042..2169365 (-) 324 WP_034014244.1 ClpX C4-type zinc finger protein -
  Q7587_RS10365 (Q7587_10360) - 2169368..2170207 (-) 840 WP_051488605.1 hypothetical protein -
  Q7587_RS10370 (Q7587_10365) - 2170204..2170449 (-) 246 WP_034014243.1 hypothetical protein -
  Q7587_RS10375 (Q7587_10370) - 2170446..2170625 (-) 180 WP_034014242.1 hypothetical protein -
  Q7587_RS10380 (Q7587_10375) - 2170622..2170813 (-) 192 WP_050159539.1 hypothetical protein -
  Q7587_RS10385 (Q7587_10380) - 2170926..2171453 (-) 528 WP_023083761.1 hypothetical protein -
  Q7587_RS10390 (Q7587_10385) - 2171450..2172355 (-) 906 WP_342179259.1 hypothetical protein -
  Q7587_RS10395 (Q7587_10390) - 2172352..2172687 (-) 336 WP_003085687.1 hypothetical protein -
  Q7587_RS10400 (Q7587_10395) - 2172690..2172920 (-) 231 WP_023127400.1 Arc family DNA-binding protein -
  Q7587_RS10405 (Q7587_10400) - 2172962..2173798 (-) 837 WP_003085692.1 prohibitin family protein -
  Q7587_RS10410 (Q7587_10405) - 2173795..2174049 (-) 255 WP_058164186.1 hypothetical protein -
  Q7587_RS10415 (Q7587_10410) - 2174149..2174382 (-) 234 WP_058164185.1 hypothetical protein -
  Q7587_RS10420 (Q7587_10415) - 2174385..2174774 (-) 390 WP_034063245.1 LuxR C-terminal-related transcriptional regulator -
  Q7587_RS10425 (Q7587_10420) - 2174895..2175743 (-) 849 WP_070410934.1 helix-turn-helix transcriptional regulator -
  Q7587_RS10430 (Q7587_10425) - 2175856..2176191 (+) 336 WP_260575365.1 hypothetical protein -
  Q7587_RS10435 (Q7587_10430) - 2176188..2176580 (+) 393 WP_023110578.1 hypothetical protein -
  Q7587_RS10440 (Q7587_10435) - 2176886..2177203 (+) 318 WP_023110580.1 hypothetical protein -
  Q7587_RS10445 (Q7587_10440) - 2177200..2177448 (+) 249 WP_021205294.1 hypothetical protein -
  Q7587_RS10450 (Q7587_10445) - 2177445..2177768 (+) 324 WP_121498958.1 hypothetical protein -
  Q7587_RS10455 (Q7587_10450) - 2177765..2178256 (+) 492 WP_023086955.1 hypothetical protein -
  Q7587_RS10460 (Q7587_10455) - 2178253..2179047 (+) 795 WP_063854945.1 hypothetical protein -
  Q7587_RS10465 (Q7587_10460) - 2179044..2179352 (+) 309 WP_023086957.1 hypothetical protein -
  Q7587_RS10470 (Q7587_10465) - 2179349..2179579 (+) 231 WP_121498957.1 hypothetical protein -
  Q7587_RS10475 (Q7587_10470) - 2179576..2180415 (+) 840 WP_023086959.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 919 a.a.        Molecular weight: 96929.17 Da        Isoelectric Point: 3.9481

>NTDB_id=865130 Q7587_RS10345 WP_003163304.1 2164860..2167619(+) (fimV) [Pseudomonas aeruginosa strain 2014S06-172]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLGSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASAPQAPVSAPRATGAPRAPQ
APAPVRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSP
REALSQVQAQNQSWRGSRNPAAGSAGARQLDATQRNAAGSAPSKVDATDNLRLVSGEGKASKGADKGGKGDSKAIADTLA
VTKESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGAAQPNAALPDASQPNAAAQAPAQPGT
PAAAAPTPAPAGEAPAAPAQPPVAPPPAPAAEKPPAPAVPAPAPVQAAEQPAPSFLDELLANPLWLAVIGGSALLALLVL
LMILSRRNAQKEKEEAQAFAADTGEEQEDALDLGKDGFDDLTLDEPEPQVAAVAPQVEKTTAQTSDALGEADIYIAYGRF
NQAAELLQNAIYDEPQRTDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQ
DELDSFSLDDLSLDDSGHAAKPDAAGQDLDDAFDLSLDDLGGDDVQADLKSDSGALDDLTLDSDLDLAASTPADKPVDDL
DFGLDFAELAETPSQPKHDDLGDFSLDLDAPEDKLSDDDFLLSLNDEVPAAAPADNEFTLDTEAAEEPALSLPDDFDLSL
ADEPTEPAAPEKGEDSFAAQLDEVSAQLDELASNLDEPKSATPSFSAEDAAVASALDGDADDDFDFLSGADEAATKLDLA
RAYIDMGDSEGARDILDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2760 bp        

>NTDB_id=865130 Q7587_RS10345 WP_003163304.1 2164860..2167619(+) (fimV) [Pseudomonas aeruginosa strain 2014S06-172]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATCGCGGCGGCCTCGGTCCTGACTTCCGGCATGGCGCATGGATTGGGACT
GGGGGAAATCACCCTGAAGTCGGCGTTGAACCAACCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGGGTT
CGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTTCAGCAAGGCGGGCGTCGATCGCCTGTACTACCTCACCGAC
CTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATTCGCGTGACCTCGTCGAAGCCGGTGCAGGAGCCCTA
CCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAACGGCCGCCTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGT
ACTCCCCGCAGGCCGCGGCAAGCGCTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCGGCGCCCCGCGAGCCCCGCAG
GCTCCGGCTCCGGTGCGTACCACCGCGCCGGCAGGCAGCGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGAT
CGCCCAGCGCAACCGTACCGATCGCGTTTCCGTACCCCAGGCGATGCTCGCGTTCCAGGAGCTGAATCCGGGCGCCTTCG
TCGATGGCAACATCAACCGGCTGAAGAGCGGCCAGGTCCTGCGCATTCCCACCGAACAGCAGATGCTGGAGCGCTCGCCG
CGCGAGGCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCAGCGCTGGCGC
CAGGCAGTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCATCCAAGGTCGACGCCACGGACAATCTGCGCCTGG
TGTCTGGCGAGGGCAAGGCCAGCAAGGGTGCCGACAAGGGCGGAAAGGGCGACAGCAAGGCGATCGCCGATACCCTGGCG
GTGACCAAGGAAAGCCTCGACAGCACTCGCCGCGAGAACGAAGAACTGCAGAGTCGCATGCAGGATCTGCAGAGCCAGTT
GGACAAGCTGCAGAAGTTGATCCAGCTGAAGGACGCCCAGTTGGCCAAGCTGCAAGGGCAGTTGGGCGCCGAAGGCCAGG
GCGCAGCCCAGCCGAACGCAGCCCTGCCGGATGCGTCCCAGCCCAATGCGGCCGCGCAGGCGCCGGCTCAGCCCGGGACT
CCTGCTGCGGCAGCGCCGACTCCTGCTCCAGCCGGAGAAGCACCCGCCGCTCCGGCGCAGCCTCCGGTGGCGCCGCCGCC
CGCGCCAGCTGCCGAGAAGCCTCCGGCACCTGCCGTTCCGGCGCCCGCTCCGGTACAGGCGGCAGAGCAGCCGGCACCGA
GCTTCCTCGACGAACTGCTGGCCAACCCGCTGTGGTTGGCGGTGATCGGCGGTAGCGCACTGCTGGCGTTGCTGGTGCTG
CTGATGATCCTGTCGCGGCGCAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCCGCGGATACCGGCGAGGAACA
GGAGGATGCGCTGGACCTGGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAGCCGCAGGTCGCAGCCGTCG
CTCCGCAGGTCGAGAAGACCACCGCGCAGACTTCCGATGCGCTGGGCGAGGCCGACATCTATATCGCCTACGGGCGTTTC
AACCAGGCCGCCGAACTGTTGCAGAACGCCATCTACGACGAGCCGCAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGT
CTATGCCGAGATGGGCGATCGCGAAGGTTTCGCTCGCCAGGAAAACGAGCTGCGCGAAATCGGCGGCGCACAGCCGCAGG
TCGAGCAGCTCAAGTCGCGCTATCCGGCAATGGTCGCGGTCGCCGCGGTTGCCGGCCTGGCCGGCGCCAAGCTGGCGCAG
GACGAGCTGGATAGCTTCAGCCTTGACGACCTGTCGCTCGACGACAGCGGTCACGCGGCCAAGCCGGATGCGGCAGGACA
GGATCTCGACGACGCCTTCGACCTGAGCCTGGACGACCTGGGCGGCGACGACGTGCAGGCCGACCTCAAGTCCGACAGCG
GGGCGCTGGACGACCTGACCCTGGACAGCGATCTGGACCTGGCGGCCTCGACCCCGGCGGATAAGCCTGTCGACGATCTC
GACTTCGGCCTGGATTTCGCGGAGTTGGCAGAGACTCCGAGCCAACCCAAGCATGACGACCTGGGCGATTTCTCCCTGGA
TCTCGACGCGCCGGAAGACAAGCTTTCGGACGACGACTTCCTGCTTTCGCTGAACGACGAAGTGCCCGCCGCGGCGCCTG
CCGACAACGAATTCACCCTCGATACCGAGGCTGCCGAAGAGCCGGCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTG
GCCGACGAGCCGACGGAGCCGGCCGCTCCGGAGAAGGGCGAGGACAGTTTCGCCGCCCAGTTGGACGAGGTGAGTGCGCA
GTTGGACGAGTTGGCCAGCAACCTTGACGAGCCGAAGAGCGCGACGCCGAGTTTCTCCGCCGAGGATGCAGCGGTCGCCT
CCGCCCTGGACGGAGACGCCGACGATGACTTCGACTTCCTCTCCGGTGCCGACGAAGCGGCGACCAAGCTGGATCTGGCT
CGCGCCTACATCGACATGGGCGATAGCGAAGGCGCGCGCGATATCCTCGACGAAGTCCTGGCCGAAGGTAACGACAGCCA
GCAGGCGGAAGCCCGCGAGTTGCTGGAGCGCCTGGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

99.674

100

0.997