Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   Q7588_RS25790 Genome accession   NZ_CP131787
Coordinates   5493358..5493915 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2014S07-062     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5488358..5498915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7588_RS25770 (Q7588_25785) pilR 5489634..5490971 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  Q7588_RS25775 (Q7588_25790) thiO 5491017..5492111 (-) 1095 WP_024928818.1 glycine oxidase ThiO -
  Q7588_RS25780 (Q7588_25795) - 5492246..5492755 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  Q7588_RS25785 (Q7588_25800) - 5492861..5493367 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  Q7588_RS25790 (Q7588_25805) pilV 5493358..5493915 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  Q7588_RS25795 (Q7588_25810) pilW 5493912..5494736 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  Q7588_RS25800 (Q7588_25815) pilX 5494733..5495320 (+) 588 WP_024928819.1 type 4a pilus minor pilin PilX -
  Q7588_RS25805 (Q7588_25820) pilY1 5495332..5498823 (+) 3492 WP_010793785.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=865112 Q7588_RS25790 WP_003119423.1 5493358..5493915(+) (pilV) [Pseudomonas aeruginosa strain 2014S07-062]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=865112 Q7588_RS25790 WP_003119423.1 5493358..5493915(+) (pilV) [Pseudomonas aeruginosa strain 2014S07-062]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995