Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   Q7589_RS25870 Genome accession   NZ_CP131785
Coordinates   5501948..5502505 (+) Length   185 a.a.
NCBI ID   WP_003110422.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2014S09-209     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5496948..5507505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7589_RS25850 (Q7589_25855) pilR 5498224..5499561 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  Q7589_RS25855 (Q7589_25860) thiO 5499607..5500701 (-) 1095 WP_033995405.1 glycine oxidase ThiO -
  Q7589_RS25860 (Q7589_25865) - 5500836..5501345 (+) 510 WP_003134932.1 Tfp pilus assembly protein FimT/FimU -
  Q7589_RS25865 (Q7589_25870) - 5501451..5501957 (+) 507 WP_023098086.1 Tfp pilus assembly protein FimT/FimU -
  Q7589_RS25870 (Q7589_25875) pilV 5501948..5502505 (+) 558 WP_003110422.1 type 4a pilus minor pilin PilV Machinery gene
  Q7589_RS25875 (Q7589_25880) pilW 5502502..5503326 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  Q7589_RS25880 (Q7589_25885) pilX 5503323..5503910 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  Q7589_RS25885 (Q7589_25890) pilY1 5503922..5507407 (+) 3486 WP_003134937.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20072.23 Da        Isoelectric Point: 7.9204

>NTDB_id=865078 Q7589_RS25870 WP_003110422.1 5501948..5502505(+) (pilV) [Pseudomonas aeruginosa strain 2014S09-209]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=865078 Q7589_RS25870 WP_003110422.1 5501948..5502505(+) (pilV) [Pseudomonas aeruginosa strain 2014S09-209]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTTGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.378

100

0.984