Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABK20_RS00150 Genome accession   NZ_AP027500
Coordinates   26887..27402 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain LR-25     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 21887..32402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK20_RS00125 (VEE02_00240) ygaZ 22286..23023 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  AABK20_RS00130 (VEE02_00250) ygaH 23013..23348 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  AABK20_RS00135 (VEE02_00260) emrR 23439..23969 (+) 531 WP_000378435.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABK20_RS00140 (VEE02_00270) emrA 24096..25268 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABK20_RS00145 (VEE02_00280) emrB 25285..26823 (+) 1539 WP_052921619.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABK20_RS00150 (VEE02_00290) luxS 26887..27402 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AABK20_RS00155 (VEE02_00300) gshA 27552..29108 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  AABK20_RS00160 (VEE02_00310) yqaA 29181..29609 (-) 429 WP_001287457.1 YqaA family protein -
  AABK20_RS00165 (VEE02_00320) yqaB 29606..30172 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABK20_RS00190 (VEE02_00330) csrA 31490..31675 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=86507 AABK20_RS00150 WP_001130211.1 26887..27402(-) (luxS) [Escherichia coli strain LR-25]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=86507 AABK20_RS00150 WP_001130211.1 26887..27402(-) (luxS) [Escherichia coli strain LR-25]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731