Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   Q7592_RS06150 Genome accession   NZ_CP131782
Coordinates   1274884..1275441 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 2016N06-105     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1269884..1280441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7592_RS06135 (Q7592_06140) pilY1 1269982..1273467 (-) 3486 WP_034040518.1 type 4a pilus biogenesis protein PilY1 -
  Q7592_RS06140 (Q7592_06145) pilX 1273479..1274066 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  Q7592_RS06145 (Q7592_06150) pilW 1274063..1274887 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  Q7592_RS06150 (Q7592_06155) pilV 1274884..1275441 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  Q7592_RS06155 (Q7592_06160) - 1275432..1275938 (-) 507 WP_003110423.1 Tfp pilus assembly protein FimT/FimU -
  Q7592_RS06160 (Q7592_06165) - 1276044..1276553 (-) 510 WP_034037343.1 Tfp pilus assembly protein FimT/FimU -
  Q7592_RS06165 (Q7592_06170) thiO 1276688..1277782 (+) 1095 WP_033943424.1 glycine oxidase ThiO -
  Q7592_RS06170 (Q7592_06175) pilR 1277828..1279165 (-) 1338 WP_003110427.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=864957 Q7592_RS06150 WP_003119423.1 1274884..1275441(-) (pilV) [Pseudomonas aeruginosa strain 2016N06-105]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=864957 Q7592_RS06150 WP_003119423.1 1274884..1275441(-) (pilV) [Pseudomonas aeruginosa strain 2016N06-105]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGATTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995