Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   Q7610_RS04000 Genome accession   NZ_CP131724
Coordinates   786087..786779 (+) Length   230 a.a.
NCBI ID   WP_075985521.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2018N05-309     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 781087..791779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7610_RS03980 (Q7610_03980) ampD 782358..782918 (-) 561 WP_075985522.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  Q7610_RS03985 (Q7610_03985) pilA 783033..783482 (+) 450 WP_005666683.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  Q7610_RS03990 (Q7610_03990) pilB 783479..784873 (+) 1395 WP_005666685.1 GspE/PulE family protein Machinery gene
  Q7610_RS03995 (Q7610_03995) pilC 784870..786090 (+) 1221 WP_005666687.1 type II secretion system F family protein Machinery gene
  Q7610_RS04000 (Q7610_04000) pilD 786087..786779 (+) 693 WP_075985521.1 A24 family peptidase Machinery gene
  Q7610_RS04005 (Q7610_04005) rho 786834..788096 (-) 1263 WP_005666690.1 transcription termination factor Rho -
  Q7610_RS04010 (Q7610_04010) metJ 788344..788661 (+) 318 WP_005631186.1 met regulon transcriptional regulator MetJ -
  Q7610_RS04015 (Q7610_04015) cueR 788675..789061 (-) 387 WP_038439225.1 Cu(I)-responsive transcriptional regulator -
  Q7610_RS04020 (Q7610_04020) - 789138..789344 (+) 207 WP_005666693.1 heavy-metal-associated domain-containing protein -
  Q7610_RS04025 (Q7610_04025) - 789430..789636 (+) 207 WP_005631184.1 heavy-metal-associated domain-containing protein -
  Q7610_RS04030 (Q7610_04030) - 789611..791779 (+) 2169 WP_136429391.1 heavy metal translocating P-type ATPase -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 26837.84 Da        Isoelectric Point: 8.5626

>NTDB_id=864838 Q7610_RS04000 WP_075985521.1 786087..786779(+) (pilD) [Haemophilus influenzae strain 2018N05-309]
MIYFAMFLLGDIFGIALWFYLSGFITRLQQEIYATYIELFPQNFLSFQPSVSSIQQKKCGHILRYFLSVGVGFIFLQIAF
KDSIFTVWFGLTLLILWAISYLDWHYQLISTTLCLWLLTIGLFGADNNFSLLTLSESIKSAASFFIVFYAIYWIAKFYYG
KEAFGRGDYWLAMALGSFIHLETLPHFLLLASVLGICFSLIHKKKKEFIPFAPFMNLSAVIIYFVKYYWY

Nucleotide


Download         Length: 693 bp        

>NTDB_id=864838 Q7610_RS04000 WP_075985521.1 786087..786779(+) (pilD) [Haemophilus influenzae strain 2018N05-309]
ATGATTTACTTCGCAATGTTTTTATTAGGCGACATCTTCGGGATCGCATTGTGGTTCTACCTATCTGGTTTTATTACCCG
TTTACAGCAAGAGATTTATGCGACTTATATTGAATTATTCCCACAAAACTTTCTGTCATTTCAGCCTAGCGTTTCCTCTA
TTCAACAAAAAAAGTGCGGTCATATTTTGAGGTATTTTTTAAGTGTTGGGGTAGGATTTATATTTTTACAAATTGCCTTC
AAAGATTCTATTTTTACTGTATGGTTCGGACTCACACTTCTTATCCTTTGGGCAATCAGTTATCTTGATTGGCACTATCA
ACTTATTTCTACTACACTCTGTTTATGGCTACTTACAATCGGTTTATTTGGGGCAGACAATAATTTTTCATTGCTTACGT
TATCTGAAAGCATAAAAAGTGCGGCAAGTTTTTTTATTGTTTTCTACGCAATCTATTGGATTGCAAAATTCTATTACGGA
AAAGAAGCCTTTGGGCGGGGAGATTATTGGCTAGCAATGGCATTAGGAAGTTTTATTCATTTAGAAACCTTACCGCACTT
TTTGTTATTAGCTTCAGTTCTTGGAATATGTTTTTCGCTTATTCATAAAAAGAAAAAAGAATTTATACCTTTTGCCCCTT
TTATGAACTTATCAGCAGTCATCATTTATTTCGTCAAATATTACTGGTATTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(92-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

90

100

0.9
  pilD Haemophilus influenzae Rd KW20

89.565

100

0.896