Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   Q7610_RS03255 Genome accession   NZ_CP131724
Coordinates   647412..647918 (+) Length   168 a.a.
NCBI ID   WP_005649305.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2018N05-309     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 642412..652918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7610_RS03235 (Q7610_03235) - 642518..642847 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  Q7610_RS03240 (Q7610_03240) - 643000..643845 (-) 846 WP_005686902.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  Q7610_RS03245 (Q7610_03245) - 643921..646515 (-) 2595 WP_342124557.1 penicillin-binding protein 1A -
  Q7610_RS03250 (Q7610_03250) comA 646614..647411 (+) 798 WP_005649306.1 pilus assembly protein PilM Machinery gene
  Q7610_RS03255 (Q7610_03255) comB 647412..647918 (+) 507 WP_005649305.1 competence protein ComB Machinery gene
  Q7610_RS03260 (Q7610_03260) comC 647915..648436 (+) 522 WP_005649304.1 competence protein ComC Machinery gene
  Q7610_RS03265 (Q7610_03265) comD 648433..648846 (+) 414 WP_005649303.1 pilus assembly protein PilP Machinery gene
  Q7610_RS03270 (Q7610_03270) comE 648856..650193 (+) 1338 WP_005649302.1 type IV pilus secretin PilQ family protein Machinery gene
  Q7610_RS03275 (Q7610_03275) - 650206..650892 (+) 687 WP_005649301.1 ComF family protein -
  Q7610_RS03280 (Q7610_03280) nfuA 650968..651564 (+) 597 WP_116939827.1 Fe-S biogenesis protein NfuA -
  Q7610_RS03285 (Q7610_03285) nudC 651631..652425 (+) 795 WP_136429425.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19724.61 Da        Isoelectric Point: 8.5473

>NTDB_id=864827 Q7610_RS03255 WP_005649305.1 647412..647918(+) (comB) [Haemophilus influenzae strain 2018N05-309]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=864827 Q7610_RS03255 WP_005649305.1 647412..647918(+) (comB) [Haemophilus influenzae strain 2018N05-309]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCGAATAACTTAAGTTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Haemophilus influenzae 86-028NP

99.405

100

0.994
  comB Haemophilus influenzae Rd KW20

99.405

100

0.994