Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   WHO62_RS16220 Genome accession   NZ_CP148114
Coordinates   3070407..3071117 (-) Length   236 a.a.
NCBI ID   WP_003229230.1    Uniprot ID   O34977
Organism   Bacillus subtilis isolate FELIX_MS506     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3065407..3076117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO62_RS16200 cysK 3065458..3066393 (+) 936 WP_003229237.1 cysteine synthase A -
  WHO62_RS16205 pepV 3066427..3067818 (-) 1392 WP_004399126.1 dipeptidase PepV -
  WHO62_RS16210 pbuO 3067915..3069213 (+) 1299 WP_003229234.1 hypoxanthine/guanine permease PbuO -
  WHO62_RS16215 ythQ 3069253..3070410 (-) 1158 WP_003229232.1 ABC transporter permease -
  WHO62_RS16220 pptA 3070407..3071117 (-) 711 WP_003229230.1 ABC transporter ATP-binding protein Regulator
  WHO62_RS16225 ytzE 3071408..3071629 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  WHO62_RS16230 rsuA 3071750..3072469 (-) 720 WP_003229226.1 pseudouridine synthase -
  WHO62_RS16235 murJ 3072538..3074172 (-) 1635 WP_003229224.1 lipid II flippase MurJ -
  WHO62_RS16240 ytfP 3074374..3075636 (+) 1263 WP_003229222.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26506.56 Da        Isoelectric Point: 5.3508

>NTDB_id=864823 WHO62_RS16220 WP_003229230.1 3070407..3071117(-) (pptA) [Bacillus subtilis isolate FELIX_MS506]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEESEFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDVQDKTGLEGQSLLDCFYKAVQGDRL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=864823 WHO62_RS16220 WP_003229230.1 3070407..3071117(-) (pptA) [Bacillus subtilis isolate FELIX_MS506]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTGGTTGGACTGATCGGAGCTAACGGCGCAGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTCTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTTCACGGCATTGAAGAGAGTGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTAGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATGTTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O34977

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432