Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   Q7610_RS00270 Genome accession   NZ_CP131724
Coordinates   56502..57221 (-) Length   239 a.a.
NCBI ID   WP_136429060.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2018N05-309     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51502..62221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7610_RS00250 (Q7610_00250) nrdR 51612..52061 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  Q7610_RS00255 (Q7610_00255) recC 52116..55496 (-) 3381 WP_136429064.1 exodeoxyribonuclease V subunit gamma -
  Q7610_RS00260 (Q7610_00260) comQ 55542..55829 (-) 288 WP_054249354.1 DUF5374 domain-containing protein Machinery gene
  Q7610_RS00265 (Q7610_00265) comP 55822..56505 (-) 684 WP_136429062.1 DUF2572 family protein Machinery gene
  Q7610_RS00270 (Q7610_00270) comO 56502..57221 (-) 720 WP_136429060.1 type II secretion system protein J Machinery gene
  Q7610_RS00275 (Q7610_00275) comN 57221..57733 (-) 513 WP_136429058.1 type II secretion system protein Machinery gene
  Q7610_RS00280 (Q7610_00280) suhB 57933..58736 (+) 804 WP_005631453.1 inositol-1-monophosphatase -
  Q7610_RS00285 (Q7610_00285) nrfE 58844..60751 (+) 1908 WP_136429056.1 heme lyase NrfEFG subunit NrfE -
  Q7610_RS00290 (Q7610_00290) - 60751..61281 (+) 531 WP_116966654.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26822.13 Da        Isoelectric Point: 9.3691

>NTDB_id=864814 Q7610_RS00270 WP_136429060.1 56502..57221(-) (comO) [Haemophilus influenzae strain 2018N05-309]
MMKTLLKGQTLLALMISLALSSLLLLSISHFYVQIQTQNQQMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKNGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITKLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQKQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=864814 Q7610_RS00270 WP_136429060.1 56502..57221(-) (comO) [Haemophilus influenzae strain 2018N05-309]
ATGATGAAAACATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCACTGGCTTTGTCTTCTTTATTGCTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACACAAAACCAACAAATGTTATTACATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCCATTTTTATTAGCCAAGAAGATAACGCCCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAATGGGAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGCAACGCTGGGGGAGGTTGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAAGCTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAACATCAGTTATGAAACATCCCTTGTTGTTGCGCTCTGGAATCAAAAACAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

97.479

99.582

0.971