Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   Q7612_RS02015 Genome accession   NZ_CP131722
Coordinates   407657..407953 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain 2018C09-260     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 402657..412953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7612_RS02000 (Q7612_02000) - 404362..404493 (+) 132 WP_173341726.1 PT domain-containing protein -
  Q7612_RS02005 (Q7612_02005) - 404432..407335 (+) 2904 WP_342123094.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  Q7612_RS02010 (Q7612_02010) - 407442..407660 (+) 219 WP_112070970.1 type II toxin-antitoxin system RelE/ParE family toxin -
  Q7612_RS02015 (Q7612_02015) HI0659 407657..407953 (+) 297 WP_005650837.1 helix-turn-helix transcriptional regulator Machinery gene
  Q7612_RS02020 (Q7612_02020) - 408137..410053 (+) 1917 WP_342122989.1 ABC transporter ATP-binding protein -
  Q7612_RS02025 (Q7612_02025) - 410063..410599 (+) 537 WP_085024580.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  Q7612_RS02030 (Q7612_02030) - 410615..411166 (+) 552 WP_342122990.1 Sua5/YciO/YrdC/YwlC family protein -
  Q7612_RS02035 (Q7612_02035) aroE 411170..411976 (+) 807 WP_342122991.1 shikimate dehydrogenase -
  Q7612_RS02040 (Q7612_02040) - 412190..412753 (+) 564 WP_048941097.1 DNA-3-methyladenine glycosylase I -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=864744 Q7612_RS02015 WP_005650837.1 407657..407953(+) (HI0659) [Haemophilus influenzae strain 2018C09-260]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=864744 Q7612_RS02015 WP_005650837.1 407657..407953(+) (HI0659) [Haemophilus influenzae strain 2018C09-260]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGCGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAACAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTATTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1