Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABK21_RS10515 Genome accession   NZ_AP027494
Coordinates   2137024..2137539 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain LR-24     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2132024..2142539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK21_RS10470 (VEE13_20000) csrA 2132611..2132796 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AABK21_RS10500 (VEE13_20010) yqaB 2134254..2134820 (+) 567 WP_000273289.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABK21_RS10505 (VEE13_20020) yqaA 2134817..2135245 (+) 429 WP_001287454.1 YqaA family protein -
  AABK21_RS10510 (VEE13_20030) gshA 2135318..2136874 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AABK21_RS10515 (VEE13_20040) luxS 2137024..2137539 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AABK21_RS10520 (VEE13_20050) emrB 2137603..2139141 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABK21_RS10525 (VEE13_20060) emrA 2139158..2140330 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABK21_RS10530 (VEE13_20070) emrR 2140457..2140987 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABK21_RS10535 (VEE13_20080) ygaH 2141078..2141413 (-) 336 WP_000119766.1 L-valine transporter subunit YgaH -
  AABK21_RS10540 (VEE13_20090) ygaZ 2141403..2142140 (-) 738 WP_338385735.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=86474 AABK21_RS10515 WP_001130211.1 2137024..2137539(+) (luxS) [Escherichia coli strain LR-24]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=86474 AABK21_RS10515 WP_001130211.1 2137024..2137539(+) (luxS) [Escherichia coli strain LR-24]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment