Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   Q7613_RS08605 Genome accession   NZ_CP131720
Coordinates   1736090..1737619 (+) Length   509 a.a.
NCBI ID   WP_032824634.1    Uniprot ID   A0A0D0H0P9
Organism   Haemophilus influenzae strain 2016N07-308     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1731090..1742619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7613_RS08580 (Q7613_08575) oppC 1731436..1732371 (+) 936 WP_005661282.1 oligopeptide ABC transporter permease OppC -
  Q7613_RS08585 (Q7613_08580) - 1732381..1733352 (+) 972 WP_005670792.1 ABC transporter ATP-binding protein -
  Q7613_RS08590 (Q7613_08585) oppF 1733349..1734347 (+) 999 WP_005657282.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  Q7613_RS08595 (Q7613_08590) - 1734387..1735253 (-) 867 WP_032824635.1 VirK/YbjX family protein -
  Q7613_RS08600 (Q7613_08595) yihA 1735358..1735975 (+) 618 WP_005662749.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  Q7613_RS08605 (Q7613_08600) comM 1736090..1737619 (+) 1530 WP_032824634.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  Q7613_RS08610 (Q7613_08605) deoC 1737653..1738324 (-) 672 WP_070828244.1 deoxyribose-phosphate aldolase -
  Q7613_RS08615 (Q7613_08610) - 1738435..1738938 (+) 504 WP_032824633.1 protein disulfide oxidoreductase -
  Q7613_RS08620 (Q7613_08615) rfaD 1738991..1739917 (+) 927 WP_070828243.1 ADP-glyceromanno-heptose 6-epimerase -
  Q7613_RS08625 (Q7613_08620) xylB 1739968..1741449 (-) 1482 WP_070828242.1 xylulokinase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55890.40 Da        Isoelectric Point: 9.8668

>NTDB_id=864733 Q7613_RS08605 WP_032824634.1 1736090..1737619(+) (comM) [Haemophilus influenzae strain 2016N07-308]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLATEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSAQVREKVLKVREIQMERAGKINAYLNSKEIERDCKLNDKDAFFLEKALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=864733 Q7613_RS08605 WP_032824634.1 1736090..1737619(+) (comM) [Haemophilus influenzae strain 2016N07-308]
ATGTCCCTTGCTATTGTTTACAGCCGTGCTTCTATGGGTGTGCAAGCGCCGCTAGTCACCATTGAGGTGCATTTAAGCAA
CGGAAAACCAGGATTTACACTTGTTGGTTTGCCAGAAAAAACCGTGAAAGAGGCACAAGACCGGGTGCGTAGTGCGTTGA
TGAATGCACAATTTAAATACCCAGCCAAGCGTATCACAGTGAATCTCGCCCCTGCGGATTTACCGAAAGAAGGTGGGCGA
TTTGATTTGCCTATTGCTATCGGAATTTTAGCTGCATCGGATCAGCTTGATGCAAGCCGTTTAAAGCAATTTGAATTTGT
GGCTGAACTTGCGCTGACGGGACAATTGCGTGGCGTACATGGTGTGATTCCCGCTATTCTTGCAGCACAAAAGTCAAAGC
GAGAGTTAATTATCGCGAAACAAAATGCTAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCACAAACGCTT
TTAGATGTAGTGCAATTTCTCAATGGTCAGGAAAAATTACCCCTCGCCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCAGGTAAAAATACGTTAGATTTAACGGATATTATTGGACAACAGCACGCTAAACGAGCATTGACCATTGCCGCAGCGG
GGCAGCATAATTTGCTCTTTCTTGGCCCACCGGGTACAGGAAAAACCATGTTAGCCAGCCGTTTGACAGGGCTTTTACCT
GAAATGACAGATTTAGAAGCGATAGAAACAGCATCTGTAACGAGTTTAGTTCAAAACGAGTTAAATTTTCATAATTGGAA
GCAACGTCCTTTTCGCGCACCACATCATAGTGCATCAATGCCAGCTTTAGTTGGTGGCGGAACGATCCCAAAACCAGGCG
AAATATCCTTAGCAACAAATGGGGTACTTTTTCTTGATGAACTTCCAGAGTTTGAACGAAAAGTGTTAGATGCACTACGT
CAGCCTTTGGAAAGTGGTGAGATTATTATTTCTAGAGCCAATGCCAAAATTCAATTTCCGGCTCGTTTTCAATTGGTGGC
TGCAATGAATCCAAGCCCCACAGGCCATTATACTGGGACACATAACCGTACTTCACCGCAGCAAATTATGCGTTATTTGA
ATCGACTTTCAGGGCCATTTTTAGATCGTTTTGATTTATCTATTGAAGTGCCTTTATTGCCACAAGGCAGCTTACAAAAT
ACAGGTGATCGTGGCGAAACCAGCGCGCAAGTTCGTGAAAAAGTGTTAAAAGTGCGTGAGATTCAAATGGAAAGAGCAGG
GAAAATTAACGCTTATTTGAACAGTAAAGAGATTGAGCGTGATTGCAAGTTAAATGATAAAGATGCCTTTTTCCTTGAAA
AAGCACTGAATAAACTGGGGCTTTCTGTTCGGGCTTATCATCGTATTTTGAAAGTTTCTCGAACCATTGCCGATCTACAA
GGAGAACAACAAATTTCTCAACCGCACTTGGCGGAGGCCTTGGGCTATCGAGCAATGGATCGTTTGCTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0H0P9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

99.411

100

0.994
  comM Glaesserella parasuis strain SC1401

79.093

99.607

0.788
  comM Vibrio cholerae strain A1552

67.456

99.607

0.672
  comM Vibrio campbellii strain DS40M4

66.075

99.607

0.658
  comM Legionella pneumophila str. Paris

51.093

98.821

0.505
  comM Legionella pneumophila strain ERS1305867

51.093

98.821

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.99

100

0.475