Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   Q7613_RS01820 Genome accession   NZ_CP131720
Coordinates   373834..374130 (+) Length   98 a.a.
NCBI ID   WP_061671753.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016N07-308     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 368834..379130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7613_RS01810 (Q7613_01810) - 370373..373390 (+) 3018 WP_342123991.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  Q7613_RS01815 (Q7613_01815) - 373659..373841 (+) 183 WP_005654546.1 shikimate 5-dehydrogenase -
  Q7613_RS01820 (Q7613_01820) HI0659 373834..374130 (+) 297 WP_061671753.1 helix-turn-helix transcriptional regulator Machinery gene
  Q7613_RS01825 (Q7613_01825) - 374314..376230 (+) 1917 WP_070828340.1 ABC transporter ATP-binding protein -
  Q7613_RS01830 (Q7613_01830) - 376240..376776 (+) 537 WP_011272152.1 type I DNA topoisomerase -
  Q7613_RS01835 (Q7613_01835) - 376792..377343 (+) 552 WP_070828341.1 Sua5/YciO/YrdC/YwlC family protein -
  Q7613_RS01840 (Q7613_01840) aroE 377347..378153 (+) 807 WP_011272150.1 shikimate dehydrogenase -
  Q7613_RS01845 (Q7613_01845) - 378165..378917 (+) 753 WP_011272149.1 DUF3800 domain-containing protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11106.97 Da        Isoelectric Point: 10.3139

>NTDB_id=864709 Q7613_RS01820 WP_061671753.1 373834..374130(+) (HI0659) [Haemophilus influenzae strain 2016N07-308]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRIKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=864709 Q7613_RS01820 WP_061671753.1 373834..374130(+) (HI0659) [Haemophilus influenzae strain 2016N07-308]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGAGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGTCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAACTTGAAACGTTATTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGATAAAAAATGCCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

98.98

100

0.99