Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   Q7613_RS00255 Genome accession   NZ_CP131720
Coordinates   55051..55338 (-) Length   95 a.a.
NCBI ID   WP_021034778.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016N07-308     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 50051..60338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7613_RS00245 (Q7613_00245) nrdR 51136..51585 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  Q7613_RS00250 (Q7613_00250) recC 51640..55005 (-) 3366 WP_011272303.1 exodeoxyribonuclease V subunit gamma -
  Q7613_RS00255 (Q7613_00255) comQ 55051..55338 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  Q7613_RS00260 (Q7613_00260) comP 55331..56014 (-) 684 WP_011272301.1 DUF2572 family protein Machinery gene
  Q7613_RS00265 (Q7613_00265) comO 56011..56730 (-) 720 WP_011272300.1 type II secretion system protein J Machinery gene
  Q7613_RS00270 (Q7613_00270) comN 56730..57242 (-) 513 WP_011272299.1 type II secretion system protein Machinery gene
  Q7613_RS00275 (Q7613_00275) suhB 57442..58254 (+) 813 WP_011272298.1 inositol-1-monophosphatase -
  Q7613_RS00280 (Q7613_00280) nrfE 58363..60270 (+) 1908 WP_011272297.1 heme lyase NrfEFG subunit NrfE -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11057.89 Da        Isoelectric Point: 9.2201

>NTDB_id=864702 Q7613_RS00255 WP_021034778.1 55051..55338(-) (comQ) [Haemophilus influenzae strain 2016N07-308]
MNKGMSLITLLFSLALFSVLFLVFNQWTAEQRKSAVKIYQDFQATQIAENQAQRQFLGLACEQLIQQNGLTFRIRCENER
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=864702 Q7613_RS00255 WP_021034778.1 55051..55338(-) (comQ) [Haemophilus influenzae strain 2016N07-308]
ATGAATAAAGGAATGTCTCTTATTACATTGTTATTTTCTTTAGCTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAGAACAGCGAAAAAGTGCGGTAAAAATTTATCAAGATTTTCAGGCAACACAAATTGCAGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCGATGTGAAAATGAACGC
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

92.632

100

0.926