Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   Q7616_RS01905 Genome accession   NZ_CP131717
Coordinates   376602..376898 (+) Length   98 a.a.
NCBI ID   WP_005650837.1    Uniprot ID   Q4QMQ7
Organism   Haemophilus influenzae strain 2016N21-284     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 371602..381898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7616_RS01890 (Q7616_01895) - 372526..372690 (-) 165 WP_012054638.1 hypothetical protein -
  Q7616_RS01895 (Q7616_01900) - 373017..375989 (+) 2973 WP_342120311.1 TonB-dependent hemoglobin/transferrin/lactoferrin family receptor -
  Q7616_RS01900 (Q7616_01905) - 376250..376609 (+) 360 WP_204703997.1 type II toxin-antitoxin system RelE/ParE family toxin -
  Q7616_RS01905 (Q7616_01910) HI0659 376602..376898 (+) 297 WP_005650837.1 helix-turn-helix transcriptional regulator Machinery gene
  Q7616_RS01910 (Q7616_01915) - 377051..378967 (+) 1917 WP_342120313.1 ABC transporter ATP-binding protein -
  Q7616_RS01915 (Q7616_01920) - 378977..379513 (+) 537 WP_105872958.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  Q7616_RS01920 (Q7616_01925) - 379529..380080 (+) 552 WP_342120316.1 Sua5/YciO/YrdC/YwlC family protein -
  Q7616_RS01925 (Q7616_01930) aroE 380084..380890 (+) 807 WP_112065193.1 shikimate dehydrogenase -
  Q7616_RS01930 (Q7616_01935) - 380902..381660 (+) 759 WP_061659696.1 DUF3800 domain-containing protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11092.94 Da        Isoelectric Point: 10.3139

>NTDB_id=864601 Q7616_RS01905 WP_005650837.1 376602..376898(+) (HI0659) [Haemophilus influenzae strain 2016N21-284]
MNKISPLGSNWNEFEQQIFNEEEIRESNLRVALIKELITSRQQLGISQKQLETLSGVKQPMIARIEKGQTNPQLETLLKL
LAPLGKTLSIVPLRVKNA

Nucleotide


Download         Length: 297 bp        

>NTDB_id=864601 Q7616_RS01905 WP_005650837.1 376602..376898(+) (HI0659) [Haemophilus influenzae strain 2016N21-284]
ATGAATAAAATCAGCCCATTAGGTTCAAATTGGAATGAGTTTGAACAGCAAATTTTCAATGAAGAAGAAATCCGCGAAAG
TAATTTGCGTGTAGCCTTAATTAAAGAATTGATTACTTCTCGCCAGCAACTTGGGATTTCCCAAAAACAACTTGAAACCT
TAAGCGGTGTGAAGCAACCTATGATTGCACGCATTGAAAAAGGACAAACGAATCCTCAGCTTGAAACGTTGTTAAAATTG
CTCGCTCCTTTAGGGAAAACCCTGTCGATTGTGCCTCTAAGGGTAAAAAATGCCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(41-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QMQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

100

100

1