Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   Q7617_RS02460 Genome accession   NZ_CP131716
Coordinates   481387..482040 (-) Length   217 a.a.
NCBI ID   WP_005692773.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 2016C10-304     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 476387..487040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7617_RS02460 (Q7617_02465) sxy/tfoX 481387..482040 (-) 654 WP_005692773.1 DNA transformation protein TfoX Regulator
  Q7617_RS02465 (Q7617_02470) recA 482414..483478 (+) 1065 WP_005651076.1 recombinase RecA Machinery gene
  Q7617_RS02470 (Q7617_02475) recX 483557..484015 (+) 459 WP_005651075.1 recombination regulator RecX -
  Q7617_RS02475 (Q7617_02480) crcB 484012..484398 (-) 387 WP_005651074.1 fluoride efflux transporter CrcB -
  Q7617_RS02480 (Q7617_02485) - 484398..485216 (-) 819 WP_005651073.1 Cof-type HAD-IIB family hydrolase -
  Q7617_RS02485 (Q7617_02490) - 485619..486623 (+) 1005 WP_005688262.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25029.43 Da        Isoelectric Point: 10.1071

>NTDB_id=864566 Q7617_RS02460 WP_005692773.1 481387..482040(-) (sxy/tfoX) [Haemophilus influenzae strain 2016C10-304]
MNIKDEHIDSVCSLLDQLVGNVSFKNLFTGYGLFHKEETMFAIWQNKKLYLRGEGVLAIQLTKLGCEPFTTNELNKRFVL
SQYYALSDQILRSNRLCRKLIILSIKQILERKLECTLRKLNRLKDLPNLTIKHERALIKVGITNVAMLREIGAENALVEL
KKSGSGATLDFYWKLVCALQNKNSQMLSQAEKERLLKKLNEVLRKNGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=864566 Q7617_RS02460 WP_005692773.1 481387..482040(-) (sxy/tfoX) [Haemophilus influenzae strain 2016C10-304]
ATGAATATAAAGGATGAGCATATAGATAGCGTTTGCTCCTTGTTAGATCAGTTAGTAGGAAATGTTTCCTTTAAAAATCT
TTTTACTGGTTACGGTTTGTTTCACAAGGAAGAGACAATGTTTGCTATTTGGCAAAATAAAAAACTTTATTTACGCGGTG
AGGGTGTTCTCGCAATTCAATTAACTAAATTAGGTTGTGAACCTTTTACAACGAATGAATTGAATAAACGGTTTGTGCTT
TCACAATATTATGCACTTTCTGATCAGATTTTACGTAGTAATAGATTGTGTAGAAAATTGATTATTCTTTCTATTAAGCA
GATTCTTGAGCGGAAGCTAGAATGTACGTTAAGAAAATTGAATCGATTAAAGGATTTACCCAATTTAACGATTAAACATG
AAAGAGCTTTAATAAAAGTTGGTATTACAAATGTTGCGATGCTAAGAGAGATTGGCGCAGAAAATGCATTGGTGGAATTA
AAGAAAAGTGGCAGTGGTGCTACGCTTGATTTTTATTGGAAATTAGTATGTGCTTTGCAAAATAAAAATAGTCAGATGTT
AAGTCAAGCTGAAAAAGAGCGTTTATTGAAGAAATTAAACGAAGTTTTGAGAAAAAATGGCTTAAAAGGCTATAGAAAAT
TAGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

99.078

100

0.991