Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   WHO32_RS00330 Genome accession   NZ_CP148112
Coordinates   59722..59952 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis isolate FELIX_MS504     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54722..64952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO32_RS00300 ridA 54887..55264 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  WHO32_RS00305 spoVG 55458..55751 (+) 294 WP_003218346.1 septation regulator SpoVG -
  WHO32_RS00310 glmU 55944..57314 (+) 1371 WP_003226732.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  WHO32_RS00315 prs 57337..58290 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  WHO32_RS00320 ctc 58375..58989 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  WHO32_RS00325 pth 59096..59662 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  WHO32_RS00330 subA/fin 59722..59952 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  WHO32_RS00335 mfd 60022..63555 (+) 3534 WP_053399331.1 transcription-repair coupling factor -
  WHO32_RS00340 spoVT 63691..64227 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=864544 WHO32_RS00330 WP_003243417.1 59722..59952(+) (subA/fin) [Bacillus subtilis isolate FELIX_MS504]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=864544 WHO32_RS00330 WP_003243417.1 59722..59952(+) (subA/fin) [Bacillus subtilis isolate FELIX_MS504]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1