Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   Q7618_RS09570 Genome accession   NZ_CP131715
Coordinates   1854945..1855982 (-) Length   345 a.a.
NCBI ID   WP_001813016.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 2006C08-243     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1849945..1860982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q7618_RS09545 (Q7618_09520) - 1850684..1852015 (-) 1332 WP_000390042.1 hemolysin family protein -
  Q7618_RS09550 (Q7618_09525) endA 1852306..1853130 (-) 825 WP_001036791.1 DNA-entry nuclease EndA Machinery gene
  Q7618_RS09555 (Q7618_09530) - 1853169..1853357 (-) 189 WP_001036519.1 DNA-directed RNA polymerase subunit beta -
  Q7618_RS09560 (Q7618_09535) murA 1853350..1854633 (-) 1284 WP_000358032.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Q7618_RS09565 (Q7618_09540) - 1854657..1854887 (-) 231 WP_000250390.1 DUF1146 family protein -
  Q7618_RS09570 (Q7618_09545) sepM 1854945..1855982 (-) 1038 WP_001813016.1 SepM family pheromone-processing serine protease Regulator
  Q7618_RS09575 (Q7618_09550) coaD 1855966..1856454 (-) 489 WP_001280746.1 pantetheine-phosphate adenylyltransferase -
  Q7618_RS09580 (Q7618_09555) rsmD 1856444..1856983 (-) 540 WP_000706963.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  Q7618_RS09585 (Q7618_09560) asnA 1857048..1858040 (-) 993 WP_000747993.1 aspartate--ammonia ligase -
  Q7618_RS09590 (Q7618_09565) - 1858152..1858835 (-) 684 WP_001016913.1 Bax inhibitor-1/YccA family protein -
  Q7618_RS09595 (Q7618_09570) - 1858891..1859631 (-) 741 WP_000152679.1 RNA methyltransferase -
  Q7618_RS09600 (Q7618_09575) - 1859665..1859943 (+) 279 WP_001174614.1 acylphosphatase -
  Q7618_RS09605 (Q7618_09580) yidC 1860021..1860947 (+) 927 WP_000835955.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37609.64 Da        Isoelectric Point: 4.9590

>NTDB_id=864530 Q7618_RS09570 WP_001813016.1 1854945..1855982(-) (sepM) [Streptococcus pneumoniae strain 2006C08-243]
MKKKIRWPLYVIAALIVTFLAFVVPLPYYIEVPGGSEDIRQVLKVNDTEDKEAGAYQFVTVGVQHATLAHMIYAWLTPFT
DIRSAQETTGGSSDVEFMRINQFYMQTSQNMAKYQGLKTAGKEIELKYFGVYVLNVTDNSTFKGILNISDTVTAVNDQTF
DSSKDLIDYVSSQKLGDSVKVTYEEDGQTKSAEGKIITLENGKNGIGIDLIDRTEVISNVPISFSTAGIGGPSAGLMFSL
AIYTQIAHPDLRNGRIVAGTGTIDRDGNVGDIGGIDKKVVASARAGAAIFFAPDNPVSEEEQKAHPDAKNNYQTALEAAK
TIKTDMKIVPVKTLQDAIDYLKNNP

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=864530 Q7618_RS09570 WP_001813016.1 1854945..1855982(-) (sepM) [Streptococcus pneumoniae strain 2006C08-243]
ATGAAAAAAAAGATTAGATGGCCTTTGTATGTCATTGCGGCCTTGATTGTGACCTTCTTGGCATTTGTGGTGCCTTTGCC
CTACTATATAGAGGTTCCAGGTGGTTCGGAAGATATTCGCCAAGTCCTTAAAGTAAATGACACAGAAGATAAGGAAGCTG
GTGCCTATCAATTCGTTACGGTTGGTGTTCAACATGCTACTTTAGCTCATATGATTTATGCTTGGTTGACACCTTTTACA
GATATTCGTAGTGCTCAGGAGACTACAGGTGGTTCTTCCGATGTTGAATTTATGCGAATCAATCAATTCTACATGCAAAC
ATCGCAAAATATGGCCAAGTATCAAGGACTAAAAACAGCTGGTAAGGAAATCGAACTCAAGTACTTTGGAGTTTATGTTT
TGAATGTGACGGATAATTCAACCTTTAAAGGGATTCTCAATATCTCTGATACAGTCACAGCAGTCAATGATCAGACCTTT
GATAGTTCCAAAGACTTGATTGATTACGTCAGTTCTCAAAAATTAGGGGACTCCGTCAAGGTCACCTATGAAGAGGATGG
GCAAACCAAGTCTGCAGAAGGAAAGATTATCACCTTGGAAAATGGCAAAAATGGAATTGGAATCGACTTGATTGACCGTA
CAGAGGTAATCAGCAATGTCCCAATTAGCTTTTCAACAGCTGGTATTGGCGGTCCAAGTGCTGGTCTCATGTTTAGTCTA
GCTATCTATACTCAAATAGCTCACCCAGATCTTCGTAATGGTCGTATTGTTGCCGGTACAGGTACCATTGACCGCGATGG
TAATGTGGGAGACATTGGAGGTATTGATAAGAAGGTTGTAGCTTCGGCTAGGGCAGGTGCTGCTATTTTCTTTGCTCCTG
ATAACCCTGTTAGCGAAGAAGAACAAAAGGCGCATCCGGACGCGAAAAACAACTACCAAACAGCCCTAGAAGCGGCTAAA
ACAATCAAGACGGATATGAAAATCGTGCCCGTTAAAACCCTACAAGATGCGATTGATTACTTGAAAAACAATCCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

59.357

99.13

0.588