Detailed information NTG0086453

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: KJS48_RS17485
• Genome accession: NZ_AP024603
• Coordinates: 3568767..3569912 (+)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain KOF112
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3563767..3574912

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KJS48_RS17465 (KOF112_33830)	-	3564664..3565092 (-)	429	WP_032869448.1	DUF1934 domain-containing protein	-
KJS48_RS17470 (KOF112_33840)	-	3565246..3565758 (+)	513	Protein_3410	bacteriocin biosynthesis protein AlbG	-
KJS48_RS17475 (KOF112_33850)	-	3565765..3567141 (-)	1377	WP_032875890.1	YncE family protein	-
KJS48_RS17480 (KOF112_33860)	-	3567181..3568536 (-)	1356	WP_032875887.1	YncE family protein	-
KJS48_RS17485 (KOF112_33870)	rapF	3568767..3569912 (+)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
KJS48_RS17490 (KOF112_33880)	-	3569896..3570015 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
KJS48_RS17495 (KOF112_33890)	speB	3570138..3571010 (-)	873	WP_032875884.1	agmatinase	-
KJS48_RS17500 (KOF112_33900)	speE	3571069..3571899 (-)	831	WP_003151052.1	spermidine synthase	-
KJS48_RS17505 (KOF112_33910)	-	3572099..3574171 (+)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
KJS48_RS17510	-	3574196..3574629 (-)	434	Protein_3418	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=86453 KJS48_RS17485 WP_074534220.1 3568767..3569912(+) (rapF) [Bacillus velezensis strain KOF112]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=86453 KJS48_RS17485 WP_074534220.1 3568767..3569912(+) (rapF) [Bacillus velezensis strain KOF112]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541